Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00307 ATGGAGAACCATAATAAGGTGCTAATGCTAATGCTGGAACCTTTGAAGCAGGTTTTTTCAATTTTGGAGATACAGAGCGCCAATACTTTGGTATATGACCAAGGGCAAGACATTTACATACGGCTGGCGTCTTCAGAACTTGATCATAAAAAGAATAAGAGGAACTTGAAGCTTGTTGGGACTCTTGCTGGGGTTATTGCATTCACCATAGGACTATCCATTCTTGTATTGGTCACATCAGCATTTAGAAATAAGCTTGGGTATATAAAAAAGTTATTTCACCGGAAGCACAAAACGGAGAAGGAAGATGGTGACTTGGCTACAATATTTGATTTTTCGACCATCACTAATGCAACAAATAACTTCTCTGACAGAAACGAGTTAGGAGAAGGTGGTTTTGGAACAGTGTACAAGGGCATAATGGTAGATGGCCAAGAGATTGCTGTAAAGAGGCTTTCTAAAACATCGGGACAAGGAACCGAGGAGTTCAAAAATGAAGTAAAGTTGATGGCAACACTTCAACACCGTAATCTTGTAAAACTTCTTGGTTGTTCTATTCAACAAGATGAAAAGTTGTTGATCTACGAATTCATGCCCAACAGAAGCTTGGATTGCTTTATTTTTGATACTATGCAAAGCAAATTACTAAATTGGACCAAGCGCTTGGAAATTATTGATGGGATTGCTCGAGGGCTGTTATCATTTATGGGAGATCAAGCTGAGGCTAATACAAATAGAGTGATGGGAACATATGGATATATGCCCCCAGAATATGCGGTGCATGGATATTTCTCAATAAAGTCTGATGTTTTTAGCTTTGGAGTCGTTTTACTTGAGATGATTAGCGGTAGGAAGAATCGCGGATTTTGTGATCCCATACACCATCTAAACCTTCTTGGTCATGCATGGAGACTATGGATTGAAGAAAGGCCACATGAGTTAATAGCTGATATATCATATGATGCAGATATATCTTCTGAGTTAGATCATAGAAGAAATAAATGGAGCTTTAACAACAAGAAACTTGCAGGGGCACTTGGAGGAATCATTTTATTTGTCATGATTCTTGGATTGACCACATTTACATACAAAAAGAGGAAGAAGCTTGCAAAGCCAGGGATGCTAAAAATATTTCATAGGAAGTGCAAAAGGGAGAAGGAAGATGTGCAATTATCAACAATATTTGGTTTTTCAACCATATCTAAAGCCACAAATCATTTTTCAGACGGTAACAAGATAGGACAAGGTGGTTTTGGACCGGTATACAAGGGCGTATTGGAAGATGGGCTAGAGATTGCGGTCAAGAGGCTATCAGAAAATTCTGAACAAGGAGAAGAACAGTTCAAAAATGAAGTTATGTTGATGGCGAAGCTTCAGCACCAAGCTTGGATTATTTCATTTTTGATTCAACGCGAAAGGAAAAGTTAA 1428 0.3845 MENHNKVLMLMLEPLKQVFSILEIQSANTLVYDQGQDIYIRLASSELDHKKNKRNLKLVGTLAGVIAFTIGLSILVLVTSAFRNKLGYIKKLFHRKHKTEKEDGDLATIFDFSTITNATNNFSDRNELGEGGFGTVYKGIMVDGQEIAVKRLSKTSGQGTEEFKNEVKLMATLQHRNLVKLLGCSIQQDEKLLIYEFMPNRSLDCFIFDTMQSKLLNWTKRLEIIDGIARGLLSFMGDQAEANTNRVMGTYGYMPPEYAVHGYFSIKSDVFSFGVVLLEMISGRKNRGFCDPIHHLNLLGHAWRLWIEERPHELIADISYDADISSELDHRRNKWSFNNKKLAGALGGIILFVMILGLTTFTYKKRKKLAKPGMLKIFHRKCKREKEDVQLSTIFGFSTISKATNHFSDGNKIGQGGFGPVYKGVLEDGLEIAVKRLSENSEQGEEQFKNEVMLMAKLQHQAWIISFLIQRERKS 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00307 475 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 81 197 - -
Vifa2g00307 475 ProSitePatterns Protein kinases ATP-binding region signature. 128 150 IPR017441 GO:0005524
Vifa2g00307 475 CDD TM_EGFR-like 342 371 - -
Vifa2g00307 475 ProSiteProfiles Protein kinase domain profile. 122 475 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00307 475 Gene3D Phosphorylase Kinase; domain 1 373 469 - -
Vifa2g00307 475 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 34 233 - -
Vifa2g00307 475 Pfam Protein tyrosine and serine/threonine kinase 410 462 IPR001245 GO:0004672|GO:0006468
Vifa2g00307 475 Pfam Protein tyrosine and serine/threonine kinase 126 232 IPR001245 GO:0004672|GO:0006468
Vifa2g00307 475 Pfam Protein tyrosine and serine/threonine kinase 244 285 IPR001245 GO:0004672|GO:0006468
Vifa2g00307 475 SUPERFAMILY Protein kinase-like (PK-like) 109 313 IPR011009 -
Vifa2g00307 475 Gene3D Phosphorylase Kinase; domain 1 80 197 - -
Vifa2g00307 475 SUPERFAMILY Protein kinase-like (PK-like) 390 461 IPR011009 -
Vifa2g00307 475 Gene3D Transferase(Phosphotransferase) domain 1 231 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00307 Vifa-Chr2 50408451 50415117 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00307 385 474 Receptor kinase-like Gene Family AT3G45860 46.809 4.48e-20 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa2g00307 PK_Tyr_Ser-Thr 8.7e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00307 - - tpra:123915365 479.559