Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00303 ATGGAAAAGGGGGATTTTTCTGAGATGCTGTCAAGGATGAAGGTTTTGGTTGATGAGGTTGTTAATAAGAAATCTGAAATTGAGGTAGAGGCTTTTTCTGAGTTTGGAAACTTGGTTGAGAAATTGCTACCAATCTTGAATGAATTGAGTGATAAAAGTATTGTCTTGGACAAGCTTTCGATACGAAAATCGTTGGAATCTCTTGAGAATGAGTTACGTCGTGCTAGAATTTTAACGAAAAGCTTGAATTTGAGACATCCGGTTAAGCAAATTGAGGATATGACGCATGATATCGGCCGGTCGTTAGGAGTTTTGCTTGTTGCGAGTCTTGAAGTGTCTATTGATTTTAGAGAACAGATTGGTGTATTGCAAAGACAGATGATGAATGCAAGATTTGATGGTGTTTCGAGTATGACTTCGAGTCCAAAATCGGAAATTTTCGCGAATGAAACAAAGACGATTGGGGAAATAGAAGAGGAAATAATTGATGTGTCTATTGGTGATGTGATTTTGCAACTTAAGAATGGCAATGATGAAGAATTTGCGGTTTCACTTCTGAGACTAAAGGAGTTCATGAGAAGTGAGAAATTGGACGGCGGGTTGATTAACGAGGAAGCAACTATTTCCATTCTTTTCAATCGTCTAAGTTCGTGTAAGGCGGATAATAGGCTATCCATAATTCAATTGCTAAGACGTATTGCTTTCGGAAATGATGAGAAAAAGGAGAAGATGGTCGAGGTTGAGTTTTTATCGACAGTGGTGAAGTCTCTTACGAGGGATTCAGAAGAGAGGAGGGAAGCAGTGGGATTGTTGCTAGACCTCTCTAACGTTCAAGCCGTTCGAAGACGGATTGGAAGAATTCAAGGGTGTATCGTTATGTTGGTTGCCATTCTTAACGGCGATGACTCAGTTGCTTCACACGATGCCGGAAAGTTGTTGGATATTTTGTCCAGTAATAATCAAAATGCACTTCATATGGCTGAGGCCGGTTACTTTAGGCCGCTAGTTCAGTATTTGAAGGAAGGCTCCGACATGAACAAGATCCTAATGGCAACAGCACTTTCTAGGTTGGAACTTACCGATCACAGCAAACTTACCCTCGGAGAAGATGGAGCAATCGAGCCACTTGTCAAAATGTTCGTCACTGGGAAACTTGAATCCAAGTTATCATCTCTAAACGCGCTACAAAATCTATCTAGCTTAAGCGAAAACGTGCAACGTTTAATTCAATCAGGAATTACGGGATCTTTACTACAACTTCTTTTCTCGGTAACATCTGTGCTCATGACTCTAAGAGAGCCAGCATCAGCCATTCTTGCAAGAATTGCTCAGTCAGAATCCATTCTCGTCAACGAAGATGTTGCTCAACAGATGCTTTCGCTTTTGAATCTTTCGAGCCCGATAATTCAAAGTCATCTATTAGAAGCTCTAAATAGTATGTCTTCTCATCTCGGTGCATCCAAAGTGAGACGGAAAATGAAAGAAAAAGAGAGTGAAAAAGCGGCTGCGGTTGGCATTCTGAGTAATCTTCCTGCTAGCGATAAAAAAGTAACCGATATTCTAAAGAGGGCAAATTTGCTACCGATTTTGATATCAATTTTGTATTCAAACAATGCAAGTAAATCACCCTCAACAAATAGCTTAATCGAGAGTGCTTCCGGTGTTATAAACCGCTTCACGAATTCATCCGACAAGAAACTACAACTCGTTTCAGTACAACACGGGATAATTCCTTTGCTCGTAAAATTACTCTCAACAGGTTCACCGATCACAAAATCAAGGGCTGCAAACTCCTTAACTCAACTATCACAAAACTCTCTTTCTCTCAGGAAATCTAGAAAATCAAGATGGTTATGTGTTCAGCCTTCAGCAAATGCATATTGTGAAGTTCATGATGGATATTGCTTTGTCAATAGCACATTTTGTTTGGTAAAAGCGGGCGCGGTTTCTCGACTTATCGAAATATTGGAAGATAAAGAGAAGGAAGTAGTTGAAGCTTCTCTTGTTGCACTTTCAACTCTTTTGCAAGATGAAATATGGGAAAATGGTGTAAATTCCATTGCCAAATTATCAGGTGTGCAAGCTATAATAAAAAGTTTAGAAGTTGGTGATGCAAAGGTTCAAGAAAAAGCATTATGGATGTTGGAGAGAATATTTAAGATTGAAGAACATAGAGTGAAATATGGAGAATCTGCTCAAGTGGTGCTTATTGATTTGGCACAAAAAAGTGATTCTAGAATGAAGTCCACAGTTGCAAAAGTATTAGCTGAGCTAGAACTCTTGCAAGATCAATCAAGTTACTTTTGA 2307 0.3927 MEKGDFSEMLSRMKVLVDEVVNKKSEIEVEAFSEFGNLVEKLLPILNELSDKSIVLDKLSIRKSLESLENELRRARILTKSLNLRHPVKQIEDMTHDIGRSLGVLLVASLEVSIDFREQIGVLQRQMMNARFDGVSSMTSSPKSEIFANETKTIGEIEEEIIDVSIGDVILQLKNGNDEEFAVSLLRLKEFMRSEKLDGGLINEEATISILFNRLSSCKADNRLSIIQLLRRIAFGNDEKKEKMVEVEFLSTVVKSLTRDSEERREAVGLLLDLSNVQAVRRRIGRIQGCIVMLVAILNGDDSVASHDAGKLLDILSSNNQNALHMAEAGYFRPLVQYLKEGSDMNKILMATALSRLELTDHSKLTLGEDGAIEPLVKMFVTGKLESKLSSLNALQNLSSLSENVQRLIQSGITGSLLQLLFSVTSVLMTLREPASAILARIAQSESILVNEDVAQQMLSLLNLSSPIIQSHLLEALNSMSSHLGASKVRRKMKEKESEKAAAVGILSNLPASDKKVTDILKRANLLPILISILYSNNASKSPSTNSLIESASGVINRFTNSSDKKLQLVSVQHGIIPLLVKLLSTGSPITKSRAANSLTQLSQNSLSLRKSRKSRWLCVQPSANAYCEVHDGYCFVNSTFCLVKAGAVSRLIEILEDKEKEVVEASLVALSTLLQDEIWENGVNSIAKLSGVQAIIKSLEVGDAKVQEKALWMLERIFKIEEHRVKYGESAQVVLIDLAQKSDSRMKSTVAKVLAELELLQDQSSYF 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00303 768 Coils Coil 58 85 - -
Vifa2g00303 768 Gene3D - 634 766 IPR011989 -
Vifa2g00303 768 Gene3D - 491 613 IPR011989 -
Vifa2g00303 768 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 18 137 - -
Vifa2g00303 768 SUPERFAMILY ARM repeat 361 723 IPR016024 -
Vifa2g00303 768 Gene3D - 194 310 IPR011989 -
Vifa2g00303 768 SUPERFAMILY ARM repeat 167 423 IPR016024 -
Vifa2g00303 768 Gene3D - 311 490 IPR011989 -
Vifa2g00303 768 SMART arm_5 319 359 IPR000225 GO:0005515
Vifa2g00303 768 SMART arm_5 401 444 IPR000225 GO:0005515
Vifa2g00303 768 SMART arm_5 564 604 IPR000225 GO:0005515
Vifa2g00303 768 SMART arm_5 237 276 IPR000225 GO:0005515
Vifa2g00303 768 SMART arm_5 636 676 IPR000225 GO:0005515
Vifa2g00303 768 SMART arm_5 680 720 IPR000225 GO:0005515
Vifa2g00303 768 SMART arm_5 360 400 IPR000225 GO:0005515
Vifa2g00303 768 SMART arm_5 514 561 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00303 Vifa-Chr2 50112696 50115492 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00303 176 768 U-box Gene Family AT1G20780 25.948 1.49e-31 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00303 K08332 - gmx:100791453 1060.83