Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00292 ATGGCACAGTTTCATGTTCTGGCTGTTGATGATAGTGTTATTGATAGAATGTTGATTGAAAGACTCCTCAAAACCTCTTCATTTCATGTTACTGTGGTTGATTCTGGTAGCAAGGCTTTGAAGTTTCTTGGTTTGGTTGAAGATGAAGCGAGAAATGAAAAGGTTTCATCTATTGCTACGGAAGCAGATCAGGTTGTGGAAGTGAATCTGATTATAACTGATTATTGTATGCCAGGAATGACAGGCTATGATCTGCTGAGAAAAATCAAGGAATCTAATTCTCTTAAAGACATACCAGTTGTGATTATGTCATCAGAGAATGTTCCATCAAGAATCAACAGATGTTTAGAAGAAGGAGCTGAAGAGTTTTTTCTGAAACCAGTTCAACAATCAGATGTAAACAAGCTGAAACCACATTTGTTGAAGACAAAAGTTAAGAATGTTGGAGACCAAACCAACAACATAGGAAGGATAGAGAACAATAAAAGATGTTACATTCAAAATTAA 507 0.357 MAQFHVLAVDDSVIDRMLIERLLKTSSFHVTVVDSGSKALKFLGLVEDEARNEKVSSIATEADQVVEVNLIITDYCMPGMTGYDLLRKIKESNSLKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQQSDVNKLKPHLLKTKVKNVGDQTNNIGRIENNKRCYIQN 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00292 168 Pfam Response regulator receiver domain 6 133 IPR001789 GO:0000160
Vifa2g00292 168 Gene3D - 5 162 - -
Vifa2g00292 168 ProSiteProfiles Response regulatory domain profile. 5 141 IPR001789 GO:0000160
Vifa2g00292 168 SUPERFAMILY CheY-like 3 135 IPR011006 -
Vifa2g00292 168 SMART REC_2 4 140 IPR001789 GO:0000160
Vifa2g00292 168 CDD REC_typeA_ARR 6 136 - -
Vifa2g00292 168 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 149 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00292 Vifa-Chr2 47302175 47303505 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00292 2 147 Response Regulator Gene Family AT3G57040 72.109 8.02e-73 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa2g00292 Response_reg 1e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00292 K14492 - gmx:100818762 248.825