Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00291 ATGGCACAGTTTCATGTTCTGGCTGTTGATGATAGTGTTATTGATAGAATGTTGATTGAAAGACTCCTCAAAACCTCTTCATTTCATGGTAATTATTTAGTTACTGTGGTTGATTCTGGTAGCAAGGCTTTGAAGTTTCTTGGTTTGGTTGAAGATGAAGCGAGAAATGAAAAGGTTTCATCTATTGCTACGGAAGCAGATCAGGTTGTGGAAGTGAATCTGATTATAACTGATTATTGTATGCCAGGAATGACAGGCTATGATCTGCTGAGAAAAATCAAGGAATCTAATTCTCTTAAAGACATACCAGTTGTGATTATGTCATCAGAGAATGTTCCATCAAGAATCAACAGATGTTTAGAAGAAGGAGCTGAAGAGTTTTTTCTGAAACCAGTTCAACAATCAGATGTAAACAAGCTGAAACCACATTTGTTGAAGACAAAAGTTAAGAATGTTGGAGACCAAACCAACAACATAGGAAGGATAGAGAACAATAAAAGATGTTACATTCAAAATTAA 519 0.3526 MAQFHVLAVDDSVIDRMLIERLLKTSSFHGNYLVTVVDSGSKALKFLGLVEDEARNEKVSSIATEADQVVEVNLIITDYCMPGMTGYDLLRKIKESNSLKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQQSDVNKLKPHLLKTKVKNVGDQTNNIGRIENNKRCYIQN 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00291 172 SUPERFAMILY CheY-like 3 139 IPR011006 -
Vifa2g00291 172 Pfam Response regulator receiver domain 6 137 IPR001789 GO:0000160
Vifa2g00291 172 SMART REC_2 4 144 IPR001789 GO:0000160
Vifa2g00291 172 ProSiteProfiles Response regulatory domain profile. 5 145 IPR001789 GO:0000160
Vifa2g00291 172 Gene3D - 5 166 - -
Vifa2g00291 172 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 153 IPR045279 GO:0009736
Vifa2g00291 172 CDD REC_typeA_ARR 6 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00291 Vifa-Chr2 47302175 47303505 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00291 2 151 Response Regulator Gene Family AT3G57040 70.199 2.15e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa2g00291 Response_reg 9.9e-18 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00291 K14492 - gmx:100818762 243.047