Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00285 ATGTCCACCGCCGATTCCATTCCCAATCACAAACTCTCCGGTTTCCTCTCAACCGTCCTCACACTCCCTCCTCCGCATACTTTCAACGACGCGCGTTTCAACGACCGTTGCGAGATCTTCAACGACGGAACCTCCATCGGATTTTGTACTCAAAACGGCGTCGTTTTAGTCCCTATCGCTGATTCAGAAGAATGCAAGAGCGCGAAGAGGAAGAAGATTGGTGCGGTGAATGGGAGCTTCAGCGTTGTGAATCAGATTTATGCGTTGCTTGTTCGGAAGTGTTTGGATATTGATGCTCGGGTTTTGTGTGTTGTGGAGGTTTTGGATAGGGTTAGGGTTGTGGTTCTTGTGGATGTTTATCTTCCGGTTCAGGTTTTGTGTGGATGGCAGTTTCCGAAATCTGGTTCGGTTGCCGGCGCGGTTTTTCGGCATTTGAGGTGTGATTGGGATGAGAGAAGATCAATGCTTTCTGATCCAGACTACTTTAGGAAGACTTGTGGAGAAAATGAGAGCATTTGGAACCTTTCTGTTTGCCATGTACTTGGTTGCAAGCTCCATTCCCCTGTGAGAGATTCTTCAAGGGAAACGCTATTTGAACTTCATGAAATTTTTAAGACAGTACCTTCACCTTGTATAGGAAAACAGCAACAGATTAATATTTCCAAGATAATACCTATGGACAACACTTGCAAATCTGGGATTTGGGAGATCTCTGATGATATTTTAATTAAAATTATATCTTCCCTGGGCCCACAGGACCTCACTAGGGTTTCTGTAACATGTAGTCATCTAAGATCCTTGGCTGCTTCAATAATGCCTTGTACAAAGTTAAATCTGTTTCCCCATCAGCAGGCAGCAGTTGAGTGGATGTTGCACCGTGAGCGAAATGCTGAACTTTTGCTACATCCTTTATATGTAGCTCTGTCAACTGACGATGGCTTTAGTTTTCATGTAAATACTGTATCTGGTGATATAGTCATTGGGGAAGCTCCTACCATCAAAGATTTCCGCGGAGGAATGTTTTGTGACGAGCCTGGCTTGGGTAAGACTGTAACAACTCTTTCTCTTATCACAAAGACACAGGGTACGTTGGCGGATCCACCAGATGGGTCACAAGTAGTCTGGTGTCAACATAGCTCTACCCAAAAATGTGGCTATTATGAGATCGGTGGTAATAACATCACTAGTTGTACTATCTTGGGTAAGAGGAATTTGTGCCAAAATACAGGTGAAAACAAATCACCTGTAGGTGTCTGCTTTGAGGAATATACTCCTGCTAGTCGAGGCACTAGAAGTTTCAGCCGAGTAAAGAAAAATCTACATTTCACATATGACGAGGAAGCTATGATTTCCAAAGAAAGAAGAGTTGGTAAAGGATCAATTAAAACAAAACATGCATCAGATGTTGCATCCCATATGTCTCAAAACAAGCTTGTTGATACTTCAAATGTTAGCGGGCAGAGTTACAAGTGGCACGGGAAGCGTAAAGCTGATTGTTTGGAATATAATGATAATTGGATTCAATGTGATGCTTGTCACAAATGGCGAAAACTTGCAGACAATAGTTTGGATAATTCTAGTGCAGCATGGTTTTGTAGTATGAACACCGACCCTTCATATCAGAGTTGTAGCGTCCCAGAGCAGTATATTCAGAATAGCTGTGAGATAACTTACTTGCGAGGATTTCATTTGAAAGGAACTCCTGGAGGTGAGAAACAAAACATATCATTTTTCACCAGCGTGCTTAAGGAACACTGCTCATTGGTAAATTCTCAGACAAAGAAGGCCCTGATTTGGTTGACCAAAATTTCGATGGACAAGCTTGCAGTAATGGAAACAAGTGGTATACGGGGTCCTATTTTATACAATTGCACTTTGTCTAATGGGACTTTGAATCCATACCACAAAATATTTAAAGCATTTGGCCTCATAAAGAGAGTAGAGAAAGGTGTATGCAGGTGGTTCTACCCAAAAAATCTTAGCAATTTGACTTTTGATGTGGCTGCCCTTGGCATGGCTCTATGTGAGCCATTAGATTTGGTTAGGTTATATTTGTCAAGAGCAACCTTGGTAGTTGTTCCTGCAAACCTGGTCGATCATTGGAAAGCTCAAATAGAAAAGCATGTTAGTCCTGGTCAATTGCAGGTTTATGTTTGGAAAGATCATCAGAAACCATCTGCACACTCTCTTGCCTGGGATTATGATGTTGTCATCACTACATTTAGTCGTTTGAGTGCAGAATGGGGGCCACGTAAGAGGAGTGCTCTAATGCAAGTGCATTGGTTTAGGATAATTTTAGATGAAGGGCATACTCTTGGCTCAAGTCTGAGCGTAACAAACAAGTTGCAAATGGCTATTTCACTGGTTGCTTCAAATCGATGGATACTAACTGGAACTCCAACACCTAACACTCCTAACAGCCAACTTACACATCTACAACCATTGCTAAGGTTCCTTCATGAAGAGGCTTATGGGCTGAATCAAAAGTCATGGGATGCCGGCGTGCTTAGGCCGTTTGAGGCAGAGATGGAAGAAGGCCGGTCTCGTCTGTTGCATTTACTTCAGAAATGCCTTATTAGTGCTAGAAAGGTAGATTTACAAAGTATTCCACCATGCATCAAGAATGTTGTTTTACTAGATTTTAACGAGGAACACGCTAGAAGTTACAATGAATTGGTACTCACTGTTCGGCGTAATATATTGATGGCTGATTGGAATGACCCTTCACATGTGGAGAGTCTACTGAATCCAAAGCAGTGGAAATTTCGAAGTGAAACTTTAAAAAACGTTAGGCTTTCATGCTGTGTTGCTGGACATATTAAAGTTACACATGCTGGAGAAGATATTCAGGAAGCAATGGATCTGTTAGTACAAAATGGTTTAGATTCTACTTCAGGGGAGTATACCTCCATAAGATACAGTCTTCTGTTTGGTGGTCACTGTGTCAGGTGCAAGGAATGGTGCCGCCTTCCTCTCATTACTCCATGTCGACATCTGTTGTGCCTTGGTTGTGTTTCCTTAGATAAGACAAAATGTACATATCCTGGCTGTGATAACTTATATGAGATGCAGAGTCCTGATACAATGGCGAGGCCAGAAAACCCTAACCCAAAGTGGTCTGTACCCAAAGATCTTATTGAGTTACAACCTTCATATAAGCAGGATACGTGGGATCCTGATTGGCAATCGACTTCTAGTAGTAAAGTTGCATATCTTGTTCAGAGGTTGAAAGCTTTGCAAAGAACTAATGAAGAAACGAGTTCATATATGGACAGTAGCAATAATGCGATGCATATTGAGAATAGTTTTCCTTTGCACACAAGACATGCTGAATCATCATTCCAGGAATGTTCTACAAGTAGGACTGGCACCAACGGGGTCCCTGAAAAAGTCTTGATATTTTCTCAGTTTCTTGAGCATATACATGTCATTGAACAGCAGTTGTCTGTTAATGGTATCAAATATACTGGAATGTACAACCCAATGCATTCTAGCCACAAGAAAAAGTCATTAGCCATGTTCCAGCATGATTCAAGTTGTATGGCACTTCTGATGGATGGGAGTGCTGCATTGGGTCTTGACTTGAGTTTTGTTACACATGTATTTTTAATGGAGCCAATTTGGGACAGAAGTATGGAGGAGCAAGTAATTAGTCGTGCCCATCGTATGGGTGCTTCTCGTCCTATTCACGTGGAAACATTAGCAATGCGTGGTACAATTGAAGAGCAAATGCTAGAATTTTTACAGGATGCTGATAAATGTAGAAGATTAAATAATAAAGATGTCAAATCTGAAGATGGCGGAGGACGGGGATATCGATCAGTGCATGATTTTGCCGAAAGCAATTATCTACTGGAACTCAAATTTGTATAA 3873 0.4157 MSTADSIPNHKLSGFLSTVLTLPPPHTFNDARFNDRCEIFNDGTSIGFCTQNGVVLVPIADSEECKSAKRKKIGAVNGSFSVVNQIYALLVRKCLDIDARVLCVVEVLDRVRVVVLVDVYLPVQVLCGWQFPKSGSVAGAVFRHLRCDWDERRSMLSDPDYFRKTCGENESIWNLSVCHVLGCKLHSPVRDSSRETLFELHEIFKTVPSPCIGKQQQINISKIIPMDNTCKSGIWEISDDILIKIISSLGPQDLTRVSVTCSHLRSLAASIMPCTKLNLFPHQQAAVEWMLHRERNAELLLHPLYVALSTDDGFSFHVNTVSGDIVIGEAPTIKDFRGGMFCDEPGLGKTVTTLSLITKTQGTLADPPDGSQVVWCQHSSTQKCGYYEIGGNNITSCTILGKRNLCQNTGENKSPVGVCFEEYTPASRGTRSFSRVKKNLHFTYDEEAMISKERRVGKGSIKTKHASDVASHMSQNKLVDTSNVSGQSYKWHGKRKADCLEYNDNWIQCDACHKWRKLADNSLDNSSAAWFCSMNTDPSYQSCSVPEQYIQNSCEITYLRGFHLKGTPGGEKQNISFFTSVLKEHCSLVNSQTKKALIWLTKISMDKLAVMETSGIRGPILYNCTLSNGTLNPYHKIFKAFGLIKRVEKGVCRWFYPKNLSNLTFDVAALGMALCEPLDLVRLYLSRATLVVVPANLVDHWKAQIEKHVSPGQLQVYVWKDHQKPSAHSLAWDYDVVITTFSRLSAEWGPRKRSALMQVHWFRIILDEGHTLGSSLSVTNKLQMAISLVASNRWILTGTPTPNTPNSQLTHLQPLLRFLHEEAYGLNQKSWDAGVLRPFEAEMEEGRSRLLHLLQKCLISARKVDLQSIPPCIKNVVLLDFNEEHARSYNELVLTVRRNILMADWNDPSHVESLLNPKQWKFRSETLKNVRLSCCVAGHIKVTHAGEDIQEAMDLLVQNGLDSTSGEYTSIRYSLLFGGHCVRCKEWCRLPLITPCRHLLCLGCVSLDKTKCTYPGCDNLYEMQSPDTMARPENPNPKWSVPKDLIELQPSYKQDTWDPDWQSTSSSKVAYLVQRLKALQRTNEETSSYMDSSNNAMHIENSFPLHTRHAESSFQECSTSRTGTNGVPEKVLIFSQFLEHIHVIEQQLSVNGIKYTGMYNPMHSSHKKKSLAMFQHDSSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIHVETLAMRGTIEEQMLEFLQDADKCRRLNNKDVKSEDGGGRGYRSVHDFAESNYLLELKFV 1290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00285 1290 Pfam SNF2-related domain 282 916 IPR000330 GO:0005524|GO:0140658
Vifa2g00285 1290 SUPERFAMILY F-box domain 229 270 IPR036047 GO:0005515
Vifa2g00285 1290 CDD F-box_SF 236 268 - -
Vifa2g00285 1290 CDD SF2_C_SNF 1129 1234 - -
Vifa2g00285 1290 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1109 1263 IPR001650 -
Vifa2g00285 1290 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 682 855 IPR027417 -
Vifa2g00285 1290 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 653 818 IPR014001 -
Vifa2g00285 1290 SMART ultradead3 275 829 IPR014001 -
Vifa2g00285 1290 Gene3D - 500 553 - -
Vifa2g00285 1290 Gene3D - 670 862 IPR038718 -
Vifa2g00285 1290 ProSitePatterns Zinc finger RING-type signature. 996 1005 IPR017907 -
Vifa2g00285 1290 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 270 360 IPR027417 -
Vifa2g00285 1290 Pfam CW-type Zinc Finger 505 548 IPR011124 GO:0008270
Vifa2g00285 1290 SMART helicmild6 1142 1224 IPR001650 -
Vifa2g00285 1290 Gene3D - 1023 1274 IPR027417 -
Vifa2g00285 1290 CDD DEXDc_SHPRH-like 677 859 - -
Vifa2g00285 1290 ProSiteProfiles Zinc finger CW-type profile. 500 551 IPR011124 GO:0008270
Vifa2g00285 1290 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 760 1250 IPR027417 -
Vifa2g00285 1290 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 142 1250 - -
Vifa2g00285 1290 Pfam Helicase conserved C-terminal domain 1127 1224 IPR001650 -
Vifa2g00285 1290 SMART fbox_2 237 277 IPR001810 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00285 279 357 RAD5 or RAD16-like Gene Family AT5G22750 36.047 2.18e-07 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa2g00285 SNF2_N 2.2e-97 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00285 - - gmx:100803102 1974.9