Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa2g00285 | ATGTCCACCGCCGATTCCATTCCCAATCACAAACTCTCCGGTTTCCTCTCAACCGTCCTCACACTCCCTCCTCCGCATACTTTCAACGACGCGCGTTTCAACGACCGTTGCGAGATCTTCAACGACGGAACCTCCATCGGATTTTGTACTCAAAACGGCGTCGTTTTAGTCCCTATCGCTGATTCAGAAGAATGCAAGAGCGCGAAGAGGAAGAAGATTGGTGCGGTGAATGGGAGCTTCAGCGTTGTGAATCAGATTTATGCGTTGCTTGTTCGGAAGTGTTTGGATATTGATGCTCGGGTTTTGTGTGTTGTGGAGGTTTTGGATAGGGTTAGGGTTGTGGTTCTTGTGGATGTTTATCTTCCGGTTCAGGTTTTGTGTGGATGGCAGTTTCCGAAATCTGGTTCGGTTGCCGGCGCGGTTTTTCGGCATTTGAGGTGTGATTGGGATGAGAGAAGATCAATGCTTTCTGATCCAGACTACTTTAGGAAGACTTGTGGAGAAAATGAGAGCATTTGGAACCTTTCTGTTTGCCATGTACTTGGTTGCAAGCTCCATTCCCCTGTGAGAGATTCTTCAAGGGAAACGCTATTTGAACTTCATGAAATTTTTAAGACAGTACCTTCACCTTGTATAGGAAAACAGCAACAGATTAATATTTCCAAGATAATACCTATGGACAACACTTGCAAATCTGGGATTTGGGAGATCTCTGATGATATTTTAATTAAAATTATATCTTCCCTGGGCCCACAGGACCTCACTAGGGTTTCTGTAACATGTAGTCATCTAAGATCCTTGGCTGCTTCAATAATGCCTTGTACAAAGTTAAATCTGTTTCCCCATCAGCAGGCAGCAGTTGAGTGGATGTTGCACCGTGAGCGAAATGCTGAACTTTTGCTACATCCTTTATATGTAGCTCTGTCAACTGACGATGGCTTTAGTTTTCATGTAAATACTGTATCTGGTGATATAGTCATTGGGGAAGCTCCTACCATCAAAGATTTCCGCGGAGGAATGTTTTGTGACGAGCCTGGCTTGGGTAAGACTGTAACAACTCTTTCTCTTATCACAAAGACACAGGGTACGTTGGCGGATCCACCAGATGGGTCACAAGTAGTCTGGTGTCAACATAGCTCTACCCAAAAATGTGGCTATTATGAGATCGGTGGTAATAACATCACTAGTTGTACTATCTTGGGTAAGAGGAATTTGTGCCAAAATACAGGTGAAAACAAATCACCTGTAGGTGTCTGCTTTGAGGAATATACTCCTGCTAGTCGAGGCACTAGAAGTTTCAGCCGAGTAAAGAAAAATCTACATTTCACATATGACGAGGAAGCTATGATTTCCAAAGAAAGAAGAGTTGGTAAAGGATCAATTAAAACAAAACATGCATCAGATGTTGCATCCCATATGTCTCAAAACAAGCTTGTTGATACTTCAAATGTTAGCGGGCAGAGTTACAAGTGGCACGGGAAGCGTAAAGCTGATTGTTTGGAATATAATGATAATTGGATTCAATGTGATGCTTGTCACAAATGGCGAAAACTTGCAGACAATAGTTTGGATAATTCTAGTGCAGCATGGTTTTGTAGTATGAACACCGACCCTTCATATCAGAGTTGTAGCGTCCCAGAGCAGTATATTCAGAATAGCTGTGAGATAACTTACTTGCGAGGATTTCATTTGAAAGGAACTCCTGGAGGTGAGAAACAAAACATATCATTTTTCACCAGCGTGCTTAAGGAACACTGCTCATTGGTAAATTCTCAGACAAAGAAGGCCCTGATTTGGTTGACCAAAATTTCGATGGACAAGCTTGCAGTAATGGAAACAAGTGGTATACGGGGTCCTATTTTATACAATTGCACTTTGTCTAATGGGACTTTGAATCCATACCACAAAATATTTAAAGCATTTGGCCTCATAAAGAGAGTAGAGAAAGGTGTATGCAGGTGGTTCTACCCAAAAAATCTTAGCAATTTGACTTTTGATGTGGCTGCCCTTGGCATGGCTCTATGTGAGCCATTAGATTTGGTTAGGTTATATTTGTCAAGAGCAACCTTGGTAGTTGTTCCTGCAAACCTGGTCGATCATTGGAAAGCTCAAATAGAAAAGCATGTTAGTCCTGGTCAATTGCAGGTTTATGTTTGGAAAGATCATCAGAAACCATCTGCACACTCTCTTGCCTGGGATTATGATGTTGTCATCACTACATTTAGTCGTTTGAGTGCAGAATGGGGGCCACGTAAGAGGAGTGCTCTAATGCAAGTGCATTGGTTTAGGATAATTTTAGATGAAGGGCATACTCTTGGCTCAAGTCTGAGCGTAACAAACAAGTTGCAAATGGCTATTTCACTGGTTGCTTCAAATCGATGGATACTAACTGGAACTCCAACACCTAACACTCCTAACAGCCAACTTACACATCTACAACCATTGCTAAGGTTCCTTCATGAAGAGGCTTATGGGCTGAATCAAAAGTCATGGGATGCCGGCGTGCTTAGGCCGTTTGAGGCAGAGATGGAAGAAGGCCGGTCTCGTCTGTTGCATTTACTTCAGAAATGCCTTATTAGTGCTAGAAAGGTAGATTTACAAAGTATTCCACCATGCATCAAGAATGTTGTTTTACTAGATTTTAACGAGGAACACGCTAGAAGTTACAATGAATTGGTACTCACTGTTCGGCGTAATATATTGATGGCTGATTGGAATGACCCTTCACATGTGGAGAGTCTACTGAATCCAAAGCAGTGGAAATTTCGAAGTGAAACTTTAAAAAACGTTAGGCTTTCATGCTGTGTTGCTGGACATATTAAAGTTACACATGCTGGAGAAGATATTCAGGAAGCAATGGATCTGTTAGTACAAAATGGTTTAGATTCTACTTCAGGGGAGTATACCTCCATAAGATACAGTCTTCTGTTTGGTGGTCACTGTGTCAGGTGCAAGGAATGGTGCCGCCTTCCTCTCATTACTCCATGTCGACATCTGTTGTGCCTTGGTTGTGTTTCCTTAGATAAGACAAAATGTACATATCCTGGCTGTGATAACTTATATGAGATGCAGAGTCCTGATACAATGGCGAGGCCAGAAAACCCTAACCCAAAGTGGTCTGTACCCAAAGATCTTATTGAGTTACAACCTTCATATAAGCAGGATACGTGGGATCCTGATTGGCAATCGACTTCTAGTAGTAAAGTTGCATATCTTGTTCAGAGGTTGAAAGCTTTGCAAAGAACTAATGAAGAAACGAGTTCATATATGGACAGTAGCAATAATGCGATGCATATTGAGAATAGTTTTCCTTTGCACACAAGACATGCTGAATCATCATTCCAGGAATGTTCTACAAGTAGGACTGGCACCAACGGGGTCCCTGAAAAAGTCTTGATATTTTCTCAGTTTCTTGAGCATATACATGTCATTGAACAGCAGTTGTCTGTTAATGGTATCAAATATACTGGAATGTACAACCCAATGCATTCTAGCCACAAGAAAAAGTCATTAGCCATGTTCCAGCATGATTCAAGTTGTATGGCACTTCTGATGGATGGGAGTGCTGCATTGGGTCTTGACTTGAGTTTTGTTACACATGTATTTTTAATGGAGCCAATTTGGGACAGAAGTATGGAGGAGCAAGTAATTAGTCGTGCCCATCGTATGGGTGCTTCTCGTCCTATTCACGTGGAAACATTAGCAATGCGTGGTACAATTGAAGAGCAAATGCTAGAATTTTTACAGGATGCTGATAAATGTAGAAGATTAAATAATAAAGATGTCAAATCTGAAGATGGCGGAGGACGGGGATATCGATCAGTGCATGATTTTGCCGAAAGCAATTATCTACTGGAACTCAAATTTGTATAA | 3873 | 0.4157 | MSTADSIPNHKLSGFLSTVLTLPPPHTFNDARFNDRCEIFNDGTSIGFCTQNGVVLVPIADSEECKSAKRKKIGAVNGSFSVVNQIYALLVRKCLDIDARVLCVVEVLDRVRVVVLVDVYLPVQVLCGWQFPKSGSVAGAVFRHLRCDWDERRSMLSDPDYFRKTCGENESIWNLSVCHVLGCKLHSPVRDSSRETLFELHEIFKTVPSPCIGKQQQINISKIIPMDNTCKSGIWEISDDILIKIISSLGPQDLTRVSVTCSHLRSLAASIMPCTKLNLFPHQQAAVEWMLHRERNAELLLHPLYVALSTDDGFSFHVNTVSGDIVIGEAPTIKDFRGGMFCDEPGLGKTVTTLSLITKTQGTLADPPDGSQVVWCQHSSTQKCGYYEIGGNNITSCTILGKRNLCQNTGENKSPVGVCFEEYTPASRGTRSFSRVKKNLHFTYDEEAMISKERRVGKGSIKTKHASDVASHMSQNKLVDTSNVSGQSYKWHGKRKADCLEYNDNWIQCDACHKWRKLADNSLDNSSAAWFCSMNTDPSYQSCSVPEQYIQNSCEITYLRGFHLKGTPGGEKQNISFFTSVLKEHCSLVNSQTKKALIWLTKISMDKLAVMETSGIRGPILYNCTLSNGTLNPYHKIFKAFGLIKRVEKGVCRWFYPKNLSNLTFDVAALGMALCEPLDLVRLYLSRATLVVVPANLVDHWKAQIEKHVSPGQLQVYVWKDHQKPSAHSLAWDYDVVITTFSRLSAEWGPRKRSALMQVHWFRIILDEGHTLGSSLSVTNKLQMAISLVASNRWILTGTPTPNTPNSQLTHLQPLLRFLHEEAYGLNQKSWDAGVLRPFEAEMEEGRSRLLHLLQKCLISARKVDLQSIPPCIKNVVLLDFNEEHARSYNELVLTVRRNILMADWNDPSHVESLLNPKQWKFRSETLKNVRLSCCVAGHIKVTHAGEDIQEAMDLLVQNGLDSTSGEYTSIRYSLLFGGHCVRCKEWCRLPLITPCRHLLCLGCVSLDKTKCTYPGCDNLYEMQSPDTMARPENPNPKWSVPKDLIELQPSYKQDTWDPDWQSTSSSKVAYLVQRLKALQRTNEETSSYMDSSNNAMHIENSFPLHTRHAESSFQECSTSRTGTNGVPEKVLIFSQFLEHIHVIEQQLSVNGIKYTGMYNPMHSSHKKKSLAMFQHDSSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIHVETLAMRGTIEEQMLEFLQDADKCRRLNNKDVKSEDGGGRGYRSVHDFAESNYLLELKFV | 1290 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa2g00285 | 1290 | Pfam | SNF2-related domain | 282 | 916 | IPR000330 | GO:0005524|GO:0140658 | |
| Vifa2g00285 | 1290 | SUPERFAMILY | F-box domain | 229 | 270 | IPR036047 | GO:0005515 | |
| Vifa2g00285 | 1290 | CDD | F-box_SF | 236 | 268 | - | - | |
| Vifa2g00285 | 1290 | CDD | SF2_C_SNF | 1129 | 1234 | - | - | |
| Vifa2g00285 | 1290 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1109 | 1263 | IPR001650 | - | |
| Vifa2g00285 | 1290 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 682 | 855 | IPR027417 | - | |
| Vifa2g00285 | 1290 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 653 | 818 | IPR014001 | - | |
| Vifa2g00285 | 1290 | SMART | ultradead3 | 275 | 829 | IPR014001 | - | |
| Vifa2g00285 | 1290 | Gene3D | - | 500 | 553 | - | - | |
| Vifa2g00285 | 1290 | Gene3D | - | 670 | 862 | IPR038718 | - |
Showing 1 to 10 of 21 entries
Functional genes information
Transcription factors information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa2g00285 | - | - | gmx:100803102 | 1974.9 |
Showing 1 to 1 of 1 entries