Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00281 ATGGAGATGGAAATACATCAAGAAAATTCTGATATCAATGGTATACCAGGGTCAGGATCTTGCCTATATGATCTCTTCTGCACTGAAACACCAAGTTTGAATTCTCAAAGTCAAAGAGAGCGATGGATGATATCTGGTCCACAAGAAAGATTAGACAATCTGATGCGTCAAGCTGGGAACAAGTACTGCGCTGATTGTGGATCATCAGATCCAAAATGGGTGTCTTCAAGTCTTGGAGTATTTATTTGCATCAAATGTTCTGGTATACATAGAAGTCTTGGAGTCCATATATCTAAGGTTCTGTCACTGAATCTAGATGAATGGACAGATGAACAAGTTGATTCATTGGTCAACTTGGGTGGAAATACAGTAATCAATAAGAAGTACGAAGCTTGCTTGCCAACTTACATAAAAAAACCAAAACCGAGTTCATCTATCGACGAGCGCTCTGATTTTATTAGGAGAAAATACGAGTTCCTACAATTTTTGGATTCTGAGGAGAATTTGTCTTGTCCCTTTATACCATCCCATGGAAGAAGTTCTTCATCCGGTCAGAGCAGTTCCTCAAACAACATTCCTCTACCAGAAAAAAAACGTTATGATAAACAAACAACTAAAAACCGTATCGGGCTATCGTTTCGAAACAGCTGGGGAAGAAAAGATTCCGAGAGTAAGACTACAAAGAAGAGTACCTCATTGGCAGGTATGGTTGAATTTGTTGGACTGGTAAAAGTTAATGTGGTTAAAGGCACTAACCTAGCTATCAGAGATATAGTGACTAGTGACCCGTATGTCATCCTTTCCCTTGGTAACCAATCGGTGAAAACGCGTGTCATAAAGAACAATTTAAATCCAGTTTGGAATGAAAGCCTAATGTTGTCAATTCCTGAGAGCATTCCTCCTCTTAGAGTGATTGTATATGACAAAGATGCATTCAAAAATGATGATTTTATGGGGGAGGCTGAAATAGACATTCAACCACTAGTATCAGCAGCAAAAGCATATGAGAAATCATCAATCAATGAGTCAATGCAGCTTGGAAAATGGGTAGCAAGTGGTGACAACACACTTGTGAAAGATGGAATAATCTCACTTGAAGAAGGAAAAGTGAGACAAGAAATCTCATTGAGGCTACAAAATGTTGAGAGAGGTGTGCTTGAAATTGAACTTGAATGTGTTCCTCTTACTCAATAG 1194 0.3869 MEMEIHQENSDINGIPGSGSCLYDLFCTETPSLNSQSQRERWMISGPQERLDNLMRQAGNKYCADCGSSDPKWVSSSLGVFICIKCSGIHRSLGVHISKVLSLNLDEWTDEQVDSLVNLGGNTVINKKYEACLPTYIKKPKPSSSIDERSDFIRRKYEFLQFLDSEENLSCPFIPSHGRSSSSGQSSSSNNIPLPEKKRYDKQTTKNRIGLSFRNSWGRKDSESKTTKKSTSLAGMVEFVGLVKVNVVKGTNLAIRDIVTSDPYVILSLGNQSVKTRVIKNNLNPVWNESLMLSIPESIPPLRVIVYDKDAFKNDDFMGEAEIDIQPLVSAAKAYEKSSINESMQLGKWVASGDNTLVKDGIISLEEGKVRQEISLRLQNVERGVLEIELECVPLTQ 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00281 397 SMART arf_gap_3 49 170 IPR001164 GO:0005096
Vifa2g00281 397 Pfam C2 domain 242 332 IPR000008 -
Vifa2g00281 397 FunFam stromal membrane-associated protein 1 isoform X1 33 168 - -
Vifa2g00281 397 SMART C2_3c 242 337 IPR000008 -
Vifa2g00281 397 Gene3D Arf GTPase activating protein 31 170 IPR038508 -
Vifa2g00281 397 MobiDBLite consensus disorder prediction 174 201 - -
Vifa2g00281 397 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 239 397 - -
Vifa2g00281 397 ProSiteProfiles C2 domain profile. 224 339 IPR000008 -
Vifa2g00281 397 MobiDBLite consensus disorder prediction 174 194 - -
Vifa2g00281 397 CDD C2_ArfGAP 240 384 - -
Vifa2g00281 397 PRINTS HIV Rev interacting protein signature 79 96 IPR001164 GO:0005096
Vifa2g00281 397 PRINTS HIV Rev interacting protein signature 100 121 IPR001164 GO:0005096
Vifa2g00281 397 PRINTS HIV Rev interacting protein signature 60 79 IPR001164 GO:0005096
Vifa2g00281 397 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 44 397 IPR044518 GO:0005096|GO:0005543
Vifa2g00281 397 Gene3D C2 domain 239 394 IPR035892 -
Vifa2g00281 397 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 238 332 IPR035892 -
Vifa2g00281 397 SUPERFAMILY ArfGap/RecO-like zinc finger 48 163 IPR037278 -
Vifa2g00281 397 ProSiteProfiles ARF GTPase-activating proteins domain profile. 48 170 IPR001164 GO:0005096
Vifa2g00281 397 CDD ArfGap 51 157 - -
Vifa2g00281 397 Pfam Putative GTPase activating protein for Arf 49 164 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00281 Vifa-Chr2 45379826 45383026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00281 48 397 C2H2 Transcription Factor Family AT4G05330 49.143 1.80e-117 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00281 K12486 - gmx:100799376 660.218