Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00276 ATGGAAGCCCTTGCTGTTACAGTCTTGGAAAAGTTGGGCTCTTCAGTTTACAAAGAGCTTGGAATCATTTGGAATCTAGAAGAGGATATGGAAAAAATGAAGACCACAGTATCTATGATAAAATCAGTACTCCTGGATGCAGAGACCAAGGCCAATAATCATCAAGTTAGTAATTGGTTGGAGGAGCTGAAAGATGTACTTTATGATGCAGATGATTTACTAGATGATTTTTCCATTGAAGATTTGAAAGGAAAAGCGATGGCTAGAAACAAAAAAGTAAAACAGGTACTATGTTTCTTCTCAAAACCAAACAAAATTGCCTATAGTTATACATTAGGCCGTCGAATGAAAGCAATCCAGAAGAGGCTAGATGACATTGCTAAAAATAAGCATGCGCTGCAACTAACTGACCGCCCTATGGAGAATCCAATTGTATATAGGGAACAAAGACAAACTTACTCTTTTGTGAGTAAAAATGAAGTTATTGGAAGAGAAGATGAAAAGAAACGTATAAAGCGTTATCTACTTGATATCAATGCTTCAGATAATGTTTCTGTAATTCCTATAGTTGGGATTGGAGGATTAGGTAAGACCGCACTTGCTCAACTAGTCTACAATGATAATGATGTTCAAAGGCATTTTGAGCTAAAAATGTGGGTGTATGTTTCTGATGAATTTGATATAAAGAAAATAGCTCGGGAGAGCATCGGGGATGAAAAGAATAGTCTGATGGAGCAAGTTCAACAGCAACTTAGAGACAAAATTCGAGGGAAAAAGTTTTTGCTTGTGTTAGATGACATATGGAACGAGGATCGTGAACTGTGGCTTAAGTTGAAGAGCTTGTTCATGGAAGGAGGAAAAGGAAGCATGGTAATTGTTACAACGCGTAGTCAGACTGTGGCGAAAATAGCAGGCACACATCCGCCTCTTTTCTTAGAAGGTTTGGATTCACAAAAATCACAGGAGTTATTCTCTCGAGTGGCTTTCGGGGAGTCAAAAGAGCAAAATGATTTGGAATTGTTAGCTATAGGAAGGGACATTGTTAAAAAATGTGCTGGCATCCCTCTTGCTATAAGGACTATTGGAAGCCTTTTGTTTTCTCGAAATTTGGGCAGAAGTGATTGGCTATATTTCAAGGATGTTGAGTTTTCAAAGATAGATCAACACAATGACAAAATCTTTTCAATCCTTAGACTGAGTTATGATCATCTTCCCTCATTTCTAAAAAAATGTTTTGCTTATTGTTCATTGTTTCCTAAAGGTTTTGTGTTTGAAAAGAAGACTCTCATTCATTTATGGGTAGCTGAGGGGTTCATTCAACAATCAAATGATATTAGATGCGTAGAAGATGTTGGTCAAGAGTACTTCATGAGTTTGCTGTCAATGTCCTTCTTTCAAGATGTCACTATGGACGATTGTGGTGGCGTAAGTACTTGTAAAATGCATGACCTTATGCATGATCTGGCACAGCTAATAGTCGGGAATGAATATGCGGTGTCTGAAGGAGAAGAAGCAAACATTGTAAACCGAACGCGTTATTTGTCTTCTCGTACTGCATTACAGTTCGGACCACCATCGCCATCTTCCTACAAGTTAAGGACATTTCATTTACTTCCACAAGTGAATTCAAGCAATCATTTGCGCCAGACACATGTTCTTTCCTTTTCAGGCCTAAAGTTCTTACGCGTGTTGACACTTTGTGGGTTGCATATTGTTGCAATCCCAAATAGTATTGGAGAGATGAAGCATTTAAGATACATTGATCTATCAAAGAATATTGCACTTAAAGATCTTCCGCCGGGAATTACTAGCCTGCAGAGCTTGCAAACTCTAAAACTTTCTGAATGTTCTGAGCTCGAAATTTTACCAAAATATCTCAATAAAAGTCTCAGGCATATTGAGTTGAATGGTTGTGTGAAGTTGACATGTATGCCACAAGGGTTAGGACAGTTGACCAATCTTCAAACACTAACACTTTTTGTATGTGGCAAAGGAAGTACAGGTGTTAACGAGCTGCGTGACCTAAACAACCTTAGAGGGAGATTAGAAATCAAAGGGTTGGATTCACTTCAAATTAGTGCTGCAGAGATTGAATATGCAAAAGTACTTATTGAGAAGCAACACCTTCAACAATTGGAATTGCGGTGGACGTACCATATTACTTTCAATCTGTGGTCATCACTGCCCGTAAGGGACGAGTTATGGTTGGAAGATGAGATGGTTTTAGAAGCTTTGCAGCCACACCACTCACTTCAAAAGCTTGTTATAGATGGATTTTGGGGCAAAAAGTTACCGGACTGGATAGGGACTCTCTCGTCTCTCTTGACTATTGAGATCCACAATTGCAATGGTTTGACATCACTACCTGAAGCAATGTGTAACCTTGTATCGTTGCAGAAACTTTGCATATATAACTGCCAACAATTGAGTGAAATTTATGCAAAACCATACGGAAAAGAATGGCCGAAAATTTCTCACATTCGAGAAGTTGAGATCCTTCCTCTGAGTCCATCATTACTCAAGTACTTCAGTTGA 2535 0.3862 MEALAVTVLEKLGSSVYKELGIIWNLEEDMEKMKTTVSMIKSVLLDAETKANNHQVSNWLEELKDVLYDADDLLDDFSIEDLKGKAMARNKKVKQVLCFFSKPNKIAYSYTLGRRMKAIQKRLDDIAKNKHALQLTDRPMENPIVYREQRQTYSFVSKNEVIGREDEKKRIKRYLLDINASDNVSVIPIVGIGGLGKTALAQLVYNDNDVQRHFELKMWVYVSDEFDIKKIARESIGDEKNSLMEQVQQQLRDKIRGKKFLLVLDDIWNEDRELWLKLKSLFMEGGKGSMVIVTTRSQTVAKIAGTHPPLFLEGLDSQKSQELFSRVAFGESKEQNDLELLAIGRDIVKKCAGIPLAIRTIGSLLFSRNLGRSDWLYFKDVEFSKIDQHNDKIFSILRLSYDHLPSFLKKCFAYCSLFPKGFVFEKKTLIHLWVAEGFIQQSNDIRCVEDVGQEYFMSLLSMSFFQDVTMDDCGGVSTCKMHDLMHDLAQLIVGNEYAVSEGEEANIVNRTRYLSSRTALQFGPPSPSSYKLRTFHLLPQVNSSNHLRQTHVLSFSGLKFLRVLTLCGLHIVAIPNSIGEMKHLRYIDLSKNIALKDLPPGITSLQSLQTLKLSECSELEILPKYLNKSLRHIELNGCVKLTCMPQGLGQLTNLQTLTLFVCGKGSTGVNELRDLNNLRGRLEIKGLDSLQISAAEIEYAKVLIEKQHLQQLELRWTYHITFNLWSSLPVRDELWLEDEMVLEALQPHHSLQKLVIDGFWGKKLPDWIGTLSSLLTIEIHNCNGLTSLPEAMCNLVSLQKLCIYNCQQLSEIYAKPYGKEWPKISHIREVEILPLSPSLLKYFS 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00276 844 Gene3D - 401 491 IPR036388 -
Vifa2g00276 844 FunFam Probable disease resistance protein At1g61300 145 309 - -
Vifa2g00276 844 Pfam NB-ARC domain 165 402 IPR002182 GO:0043531
Vifa2g00276 844 Gene3D - 314 400 IPR042197 -
Vifa2g00276 844 Gene3D - 145 307 IPR027417 -
Vifa2g00276 844 Pfam Rx N-terminal domain 7 92 IPR041118 -
Vifa2g00276 844 PRINTS Disease resistance protein signature 254 268 - -
Vifa2g00276 844 PRINTS Disease resistance protein signature 603 619 - -
Vifa2g00276 844 PRINTS Disease resistance protein signature 351 365 - -
Vifa2g00276 844 PRINTS Disease resistance protein signature 186 201 - -
Vifa2g00276 844 Gene3D Ribonuclease Inhibitor 529 841 IPR032675 -
Vifa2g00276 844 Gene3D - 6 110 - -
Vifa2g00276 844 SUPERFAMILY L domain-like 480 812 - -
Vifa2g00276 844 FunFam Probable disease resistance protein At1g63360 401 491 - -
Vifa2g00276 844 PANTHER DISEASE RESISTANCE PROTEIN RP 37 803 IPR044974 GO:0006952
Vifa2g00276 844 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 143 415 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00276 Vifa-Chr2 43555535 43558069 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00276 183 844 WRKY Transcription Factor Family AT5G45050 23.088 9.40e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00276 - - mtr:11424880 1098.57