Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00265 ATGAGTATGTTAGGCCTAAGAGACCTAGTTCTCATTGCTCCATCACCTTCGTCTCTTCACCATCATCAACAACAACAACAACATCAACACAATCATCAAAACCAACCCATATCATCAGATCACAATTCATCTGCTTCCTTAAGTGTCGGTTTTGGAATTTTCCCACTTCTTACAGCCACACCCTGCATGCCACAACCACAACCACAACCAAACCAATCTCACAACAATGAAGTTCAAGAAAATAATAACAACAACTTTTGGAACCTTAGGATGTGTCCCGAACCAAAAAAAGTGATAACTGATAATAATAACAATGATGATGATGAGAATGATAATAATAATAACAAGATGGTTATGATGGAGAGTGAAGAGAATGGTGTGTATGGTTCTGAGTATAGAGTGTGTCATGATTGTGGGAATAGAGCTAAGAAAGATTGTGTTTTTAGGAGATGTAGGACTTGTTGCAAGGGACGTGGTTATGATTGTAGTACTCATTTGAAGAGTACTTGGATTCCTTCGACTCGTCGGAGGGATCGGGAAGGGGAGATTGTTGGTGGTGATGGTGGTGGTGAGGGTTGTTCTGGTGTTAAGAGACCCAAGATTTTATTAGGATCTTCACAAAATGCTGCTGCTACTTCTCATAGTTCCAATTCTAATGCTACTACACCAAAGAGTTTTGCTAATAGCTCTTGTCATCAAGATGCAAGTTTCAAAGAGGCATTACCAGGTCAAGTTCATGCACCTGCTGTATTCAAATGCCATAGAGTAACTGCTATTGGAAATGGAGAAGATGAGTTTGCTTATTTGGCGACGGTTCATATTAGTGGCCATGTGTTTAAAGGGTTTCTCTATGATCATGGTGTTGATGGAAAAAATCCAATGGCTTGTGTTTCTGAACTTCAGTTGGGAAACAATTGTAGTGGAAAGAATGGTGAATGTTCTTCTGCAATTGGTGCTTACCCTGCTTCTGCTAGCTAG 978 0.3998 MSMLGLRDLVLIAPSPSSLHHHQQQQQHQHNHQNQPISSDHNSSASLSVGFGIFPLLTATPCMPQPQPQPNQSHNNEVQENNNNNFWNLRMCPEPKKVITDNNNNDDDENDNNNNKMVMMESEENGVYGSEYRVCHDCGNRAKKDCVFRRCRTCCKGRGYDCSTHLKSTWIPSTRRRDREGEIVGGDGGGEGCSGVKRPKILLGSSQNAAATSHSSNSNATTPKSFANSSCHQDASFKEALPGQVHAPAVFKCHRVTAIGNGEDEFAYLATVHISGHVFKGFLYDHGVDGKNPMACVSELQLGNNCSGKNGECSSAIGAYPASAS 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00265 325 NCBIfam LRP1 C-terminal domain 241 288 IPR006511 -
Vifa2g00265 325 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 21 315 IPR007818 GO:0003700|GO:0006355
Vifa2g00265 325 MobiDBLite consensus disorder prediction 60 87 - -
Vifa2g00265 325 NCBIfam putative zinc finger domain, LRP1 type 134 176 IPR006510 -
Vifa2g00265 325 MobiDBLite consensus disorder prediction 17 45 - -
Vifa2g00265 325 MobiDBLite consensus disorder prediction 69 87 - -
Vifa2g00265 325 Pfam Domain of unknown function (DUF702) 133 289 - -
Vifa2g00265 325 MobiDBLite consensus disorder prediction 205 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00265 Vifa-Chr2 40206760 40208461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00265 1 316 C2H2 Transcription Factor Family AT5G12330 40.557 1.39e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vifa2g00265 DUF702 9.7e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00265 - - gmx:100806835 382.874