Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00263 ATGGAGGCTATTGTTGGAGGAGCACTTCTTTCGGCTTCTATGGAGATGTTGGTGAAAAAGGTTGTTTCTGGTGAGTTTCTTGATTTGTTTAGGAGGACTAAGCTTGACGTTGACCTGTTGGAGAAGCTGGAGATAACACTGCTGAGCCTTCAATCTGTACTTCATGATGCTGAGGACAAACAGATCGCTAACCCTGCTGTCAAGAAGTGGCTGGAGATGTTGCAAGATGCTGTATTTGAAGCTGACGATCTCTTCGACGAACTCAACACCCAAGCTTTAAGGTGCCAAGCTGAAGGTGGTCAGGTTCTTAATAAGTTTTTGTCTTATTTTAAAAGGTTTAATAAAAAGATCAATTCTAAACTGCAAAAATTATTCGGAAGATTAGAACATTTAAAAGACCAAAATCTTGGATTGAAAGAAGGTGATTCCAACTGTGTTTGGAATGCAACTCCTACAAGTCCTTTTTTGAGAGATGAATCTGCTATTTATGGCAGAGACGATGACAGAAAGAAACTTAAAGAGTTTTTGCTGTTAGAGGATGGTTGTGATAGTGGAAGTAAAATAGGAGTGATTTCCATTGTGGGTATGGGAGGGTTAGGAAAAACAACACTAGCTAAACTCCTTTATAATGATCCTCATGTGAAGGAGATGTTTGAAGTCAAAGGATGGGCACATATTCCAAAAGATTTCAATGTCGCCACCGTCACTAAAACCATTCTTGAGTCTGTCACCCTAGATACATCTACTGACACTAACTTACTTAAACTCCAAGTTCAATTGCAGCAAAGCTTAAGTAACAAAAAGTTTTTACTAGTGTTGGATGATATGTGGTATGGAAACTATGTTGGTTGGAATAGTCTAATTGATATCTTTAATGTTGGCCAAAATGGGAGTAAGATCATCATCACAACTCGCGATGAAAGAGTTGTATTACCCATGCTAAAATATCTCTGTGTCCACCATTTGAGATCTTTGGAAACCGAAGACTCATGGTCTTTACTAGCCAGACATGCATTTGTAGAAACAAACTACCAACAACATCCCAATCTAGAAATAATTGGTAGAGAAATTGCCAAAAAGTGTGGCGGCTTACCATTAGCTGCAGTAGCATTGGGGGGTATTCTTCGCACCAATTTGTCACAAGATCATTGGAATGATGTATTAAACAATAGTATTTGGGAAAATACAAATGATGAGGTGCAACCAGCTCTGCTACTGAGCTATCGGTTTCTTCCAGCTTTTTTAAAAGGATGCTTTGCTTATTGTTCAATTTTTCCAAAGAACTCAACCTTATGGAAAAAGTCGGTGGTTCAGTTGTGGATTGCAGAGGGCTTAGTACCTCGGCCCGAAAGTGAGAAAAATTGGGAAAAAGTAGCAGAAAAATACTTCGATGAACTAGTGTCAAGGTCTCTGATACGTCAACGGTTCCTTGATCATGAGGAAAACAACTTTGAAATGCACGATCTCATCAATGATTTAGCTATGACAGTTTCATCTCCATATTGCACTAAGTTAGACAATGATAAGCCAAGTGAAAGAGTAGATAAAAGGGTGCGACACATGTCATACAACAAATCAGTATATGAACCCGAAGATAAATTTGATGAATTACATGGATTAAAAGGTTTACGAACCTTTCTAGCCACACCATTAGGGTATTCTAAGAATCCCATTTCATTGAAGTTATTTTCTGACTTGTTGTCGACAATGACACAATTACACGTGTTGTCGCTTTCATACTGCAGAAATATCGTTGAGTTGCCCAAATCTATTGGAAATTTGATATGTCTGCGATACTTGAATCTCTCTCACACTTGGATTAAAAGGTTGCCTTCAGAAACATGCAAGCTTTACAATTTGCAGACTTTGTTGCTGTCATTCACACAACTCATTGAATTGCCAAAGGACATGGGGAAATTGGTGAAACTACGCCACCTTGATATTAGATGCACTGAATTGAAGAAAATGCCGGCACAAATATCCAAATTAGAAAATCTACAGACATTGTCAGACTTTATTGTGAGCAGCGTTAAGGAAGTAGGGTTGAAGATTGAGGATCTTGGAAAATATCCTCATCTATCAGGAAGCCTTTGCATCTCGCAACTTGAAAATGTAACTGACCCATCCCATGCTTCTCAAGCAAACTTGGAGATGAAAACGGAAATTGACGAGTTGGAACTAGTATGGTCTTACATTACTCCTTTAAACTCAGAAATAGAAAATGTCGTATTGGAACGTCTGCGCCCGTCGACATATTTGAAGCGTCTGAGCATCTCCGGATACAGTGGAGACAAATTACCAAATTGGATGATTTGTCTGAATTCTCTTCAAAAGATGACCTTAGAAAACATTCCATCTCTAACATCCTTTCCGAGCGACTGTCTTCCCAAAACCTTACAATCTCTCAACATAGAGGGTTGTGATTCATTTACATCATTTACTCTGTGCTCTCTCCCTGTCCTCAAAATTCTAAGTATTCGCAAGTGTAGACAATTAAAATCCATATTAATTGCAGAAGATGCATCGAAACAGAACCTCTTGTTTCTTAGAACCATCCATATATGGAAATGCAATGAATTGGAGTCGGTTTCTCTGATTGGATTGCCTATTCCTAACCTCACTCATTTAAGTGTTACTAAGTGTGAGAAGTTACGTTCTCTACCTGAATCAATAAAGACTCTAACTAGCCTTCAAAATATGGAAATTGTTGACCTCCCAAATCTGCAATCGTTCTCCATAGATGAGTTGCCTATCAGTCTACGATACTTGACGATTGGCAAGGTTGGAGGGATTTGGTGGAATACAACTTGGGAACATCTCACTTCTCTTTCAGGGTTGGATACTTGGGGTGATGATATTGTGAAGGGGCTGATTGAAAGGCAAGTTCCGTTTCTACCCACTAATCTCGTTTCCTTAGGTATCTATTGCCTTGAAGATGTGGAATGCTTGGATGGGAAGTGGCTTCAACATCTCACCTCTCTCCATAAACTTATTATTGATAATGCACCCAAGCTCAAGTCCAAGGGAAAGAGTGGCTTAAGATTTCTCACATTCCCGAAATATATGTATACGACCACTGAGTATTATTACATCAAGATGAATTTCAATCCCAACTTTCAAAGCATGGAAGTATTCAAGAAAAAGTACTTCTATGACTCGCATGCCATGACTGGCTTCCTCAACATTGTCCTGCATGGCTTGGGATAG 3207 0.3904 MEAIVGGALLSASMEMLVKKVVSGEFLDLFRRTKLDVDLLEKLEITLLSLQSVLHDAEDKQIANPAVKKWLEMLQDAVFEADDLFDELNTQALRCQAEGGQVLNKFLSYFKRFNKKINSKLQKLFGRLEHLKDQNLGLKEGDSNCVWNATPTSPFLRDESAIYGRDDDRKKLKEFLLLEDGCDSGSKIGVISIVGMGGLGKTTLAKLLYNDPHVKEMFEVKGWAHIPKDFNVATVTKTILESVTLDTSTDTNLLKLQVQLQQSLSNKKFLLVLDDMWYGNYVGWNSLIDIFNVGQNGSKIIITTRDERVVLPMLKYLCVHHLRSLETEDSWSLLARHAFVETNYQQHPNLEIIGREIAKKCGGLPLAAVALGGILRTNLSQDHWNDVLNNSIWENTNDEVQPALLLSYRFLPAFLKGCFAYCSIFPKNSTLWKKSVVQLWIAEGLVPRPESEKNWEKVAEKYFDELVSRSLIRQRFLDHEENNFEMHDLINDLAMTVSSPYCTKLDNDKPSERVDKRVRHMSYNKSVYEPEDKFDELHGLKGLRTFLATPLGYSKNPISLKLFSDLLSTMTQLHVLSLSYCRNIVELPKSIGNLICLRYLNLSHTWIKRLPSETCKLYNLQTLLLSFTQLIELPKDMGKLVKLRHLDIRCTELKKMPAQISKLENLQTLSDFIVSSVKEVGLKIEDLGKYPHLSGSLCISQLENVTDPSHASQANLEMKTEIDELELVWSYITPLNSEIENVVLERLRPSTYLKRLSISGYSGDKLPNWMICLNSLQKMTLENIPSLTSFPSDCLPKTLQSLNIEGCDSFTSFTLCSLPVLKILSIRKCRQLKSILIAEDASKQNLLFLRTIHIWKCNELESVSLIGLPIPNLTHLSVTKCEKLRSLPESIKTLTSLQNMEIVDLPNLQSFSIDELPISLRYLTIGKVGGIWWNTTWEHLTSLSGLDTWGDDIVKGLIERQVPFLPTNLVSLGIYCLEDVECLDGKWLQHLTSLHKLIIDNAPKLKSKGKSGLRFLTFPKYMYTTTEYYYIKMNFNPNFQSMEVFKKKYFYDSHAMTGFLNIVLHGLG 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00263 1068 PRINTS Disease resistance protein signature 190 205 - -
Vifa2g00263 1068 PRINTS Disease resistance protein signature 361 375 - -
Vifa2g00263 1068 PRINTS Disease resistance protein signature 263 277 - -
Vifa2g00263 1068 PRINTS Disease resistance protein signature 568 584 - -
Vifa2g00263 1068 Pfam Rx N-terminal domain 10 102 IPR041118 -
Vifa2g00263 1068 FunFam Probable disease resistance protein At1g63360 408 496 - -
Vifa2g00263 1068 Coils Coil 40 60 - -
Vifa2g00263 1068 Gene3D Ribonuclease Inhibitor 548 922 IPR032675 -
Vifa2g00263 1068 Gene3D - 407 496 IPR036388 -
Vifa2g00263 1068 SUPERFAMILY L domain-like 849 1036 - -
Vifa2g00263 1068 Gene3D - 151 315 IPR027417 -
Vifa2g00263 1068 Gene3D - 324 406 IPR042197 -
Vifa2g00263 1068 Pfam NB-ARC domain 171 390 IPR002182 GO:0043531
Vifa2g00263 1068 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 422 IPR027417 -
Vifa2g00263 1068 PANTHER DISEASE RESISTANCE PROTEIN RP 40 858 IPR044974 GO:0006952
Vifa2g00263 1068 Coils Coil 114 134 - -
Vifa2g00263 1068 Gene3D - 15 126 - -
Vifa2g00263 1068 SUPERFAMILY L domain-like 486 904 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00263 Vifa-Chr2 39736165 39739992 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00263 188 881 WRKY Transcription Factor Family AT5G45050 22.703 1.96e-08 57.0