Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00260 ATGAAAAACAAGAAAGCAAAGACCAAAACCCTCCAACATCACAAGACTCACAAAAAAAAGCAACAAATCATCATCAACACAACAAATGAGAGACTTAAAAGAGATGAATGGAGTGAAGGAGCAGTGACAACACTTCTTGAATCCTATGAATCAAAATGGATACTTAGAAACCGAGCAAAACTCAAAGGACAAGATTGGGAAGACGTTGCAAAACATGTTTCGTCGCGATCGAATTCGACTAAGTCCCCGAAAACACAAACTCAGTGTAAGAATAAGATTGAGTCAATGAAGAAAAGGTATAGATCGGAATCAGCTAGCTCGGATGTTTCGGCTTGGCCTTTGTATTCTAGGCTTGATCTTCTTCTTCGTGGTACGGGACAATTAGCTACGAATGTTGCCACGAAATTGCTACAAGAAGGTGAGCTAGAAACTAAGTCATCTGATCATGTACCTAACAAGAATCCATTAGAAACCGATAGCAGCACGCCTGCGCTTTACAGCGAAAAAGGCGAGGAAAGATGCAAGAAGCGGAGAATGAGATCAGAGAACAACAACAGTAACAAGAGACAAAAGAAAGAAGCAATAGGAATAGCAGAAAGCATAAGGTGGCTAGCAGAAGTTGTTGTAAGGTCAGAGCAAACAAGAATGGACACATTGAAAGAGATAGAGAAGATGAGAGTTGAGGCTGAGGCAAAGAGAGGGGAAATGGAGATCAAGAGAACTGAAATTATTGCTAATACACAAATTGAGATTGCTAGGATCTTTGCAAATGTTAATAATAAAGATAAAGATAAAGATGTTGATTCATCATTGAGAATTGGAAGAAGTTAA 831 0.3899 MKNKKAKTKTLQHHKTHKKKQQIIINTTNERLKRDEWSEGAVTTLLESYESKWILRNRAKLKGQDWEDVAKHVSSRSNSTKSPKTQTQCKNKIESMKKRYRSESASSDVSAWPLYSRLDLLLRGTGQLATNVATKLLQEGELETKSSDHVPNKNPLETDSSTPALYSEKGEERCKKRRMRSENNNSNKRQKKEAIGIAESIRWLAEVVVRSEQTRMDTLKEIEKMRVEAEAKRGEMEIKRTEIIANTQIEIARIFANVNNKDKDKDVDSSLRIGRS 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00260 276 MobiDBLite consensus disorder prediction 1 21 - -
Vifa2g00260 276 Pfam Myb/SANT-like DNA-binding domain 34 120 IPR044822 -
Vifa2g00260 276 Gene3D - 37 102 - -
Vifa2g00260 276 MobiDBLite consensus disorder prediction 166 192 - -
Vifa2g00260 276 FunFam Trihelix transcription factor ASIL2 37 102 - -
Vifa2g00260 276 MobiDBLite consensus disorder prediction 142 192 - -
Vifa2g00260 276 Coils Coil 219 239 - -
Vifa2g00260 276 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 19 258 IPR044823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00260 Vifa-Chr2 38660470 38662316 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00260 33 130 Trihelix Transcription Factor Family AT3G14180 35.294 5.66e-15 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vifa2g00260 Myb_DNA-bind_4 1.7e-18 CL0123