Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00258 ATGGAAGAAGCTTTGTTAAACGACGAATTACCAAAATTCAGTGACATCAGACGCTATTTCTGCCCATACTGCAACATCTGTAGGTCCAAAAAAACCCTAATCACCTCCCACATCAATTCCCAACACAAGGAAGAGTTAGAGAAAGCAAAAGATGAATCTGAACATGAAGCAGAGGCTACTTTGAAAGCTAATACATGTGAGGAGTGTGGTGCTAGTTTCAAAAAACATGCTTATTTGTTGCAGCATATGCAAAGCCATTCCCTTGAGGTTGGGAGACCTCCTGAGAAGCTTCATCAAGGATATGCCTCGGTCACGCTCAATATCCAAAACGAGAGGCCGTATGTATGTAACCTTGAGGATTGTAATGCAAGTTACAGAAGGAAGGACCATTTGAATCGTCACCTTCTACAACATCAAGGGAAAAATTTCAAATGTCCCATCGAGAATTGCAAGAGTGATTTCTCTTTGCAGAGCAATTTGAAAAGACATATTGGCGAGATGCATGATGAAAATTCTACACCTGCTAGGAATAGTGAAAATCCGAAGCAGTTTCTATGTCCTGAAATTGGCTGTGGAAAGGTTTTCAGATATGCATCACAGCTACAGAAGCATGAGGATTCTCATGTTACGCTGGAGACAGTTGACGTGGTGTGCTTAGAGCCGGGTTGCTTGAAACATTTCACCAATTCCGAGTGCCTTAAGGCTCATGTTAAGTCCTGCCATCAATATGTAACCTGTGACACTTGTGGGACTAAGCAACTGAAGAAGAACATGAAAAGGCATCTTCGTACACACGAAGCAAGCACTTCATCAGAACCCTTTAAATGTGAATTTGAGGATTGTGACTGCACATTCTCAACTAAATCTAATCTTCGAAAGCATGAGAAGGCAGTACACTTAGAATTAAGGCATTTTGTGTGTGGATTTCCTAACTGTGGCATGAGATTTGCTTACAAACACGTGAGAGACAATCATGAAAAGACGGCAAAACATCTTTTTACCCTTGGTGATTTTGAAGAAGCTGATGAAGAATTCAGGTCAAGGCCAAGGGGAGGGGTGAAGAGAAAATTTCCTACGGTAGATATGTTGGTCAGGAAGAGAGTTACGCCACCTGGTCAATTGGAGAACTTGTTGTTTATGCAGTCTTGTGATGAGTAA 1158 0.4154 MEEALLNDELPKFSDIRRYFCPYCNICRSKKTLITSHINSQHKEELEKAKDESEHEAEATLKANTCEECGASFKKHAYLLQHMQSHSLEVGRPPEKLHQGYASVTLNIQNERPYVCNLEDCNASYRRKDHLNRHLLQHQGKNFKCPIENCKSDFSLQSNLKRHIGEMHDENSTPARNSENPKQFLCPEIGCGKVFRYASQLQKHEDSHVTLETVDVVCLEPGCLKHFTNSECLKAHVKSCHQYVTCDTCGTKQLKKNMKRHLRTHEASTSSEPFKCEFEDCDCTFSTKSNLRKHEKAVHLELRHFVCGFPNCGMRFAYKHVRDNHEKTAKHLFTLGDFEEADEEFRSRPRGGVKRKFPTVDMLVRKRVTPPGQLENLLFMQSCDE 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00258 385 Gene3D Classic Zinc Finger 171 243 - -
Vifa2g00258 385 ProSitePatterns Zinc finger C2H2 type domain signature. 307 331 IPR013087 -
Vifa2g00258 385 Pfam Zinc finger, C2H2 type 65 86 IPR013087 -
Vifa2g00258 385 Pfam Zinc finger, C2H2 type 185 208 IPR013087 -
Vifa2g00258 385 Pfam Zinc finger, C2H2 type 274 299 IPR013087 -
Vifa2g00258 385 Pfam Zinc finger, C2H2 type 114 138 IPR013087 -
Vifa2g00258 385 ProSiteProfiles Zinc finger C2H2 type domain profile. 114 143 IPR013087 -
Vifa2g00258 385 ProSitePatterns Zinc finger C2H2 type domain signature. 186 208 IPR013087 -
Vifa2g00258 385 Gene3D Classic Zinc Finger 247 304 - -
Vifa2g00258 385 ProSiteProfiles Zinc finger C2H2 type domain profile. 184 213 IPR013087 -
Vifa2g00258 385 SUPERFAMILY beta-beta-alpha zinc fingers 255 313 IPR036236 -
Vifa2g00258 385 SUPERFAMILY beta-beta-alpha zinc fingers 124 187 IPR036236 -
Vifa2g00258 385 ProSitePatterns Zinc finger C2H2 type domain signature. 145 168 IPR013087 -
Vifa2g00258 385 Coils Coil 39 63 - -
Vifa2g00258 385 SUPERFAMILY beta-beta-alpha zinc fingers 63 138 IPR036236 -
Vifa2g00258 385 ProSiteProfiles Zinc finger C2H2 type domain profile. 274 304 IPR013087 -
Vifa2g00258 385 ProSitePatterns Zinc finger C2H2 type domain signature. 218 241 IPR013087 -
Vifa2g00258 385 Gene3D Classic Zinc Finger 141 170 - -
Vifa2g00258 385 SMART c2h2final6 143 168 IPR013087 -
Vifa2g00258 385 SMART c2h2final6 64 86 IPR013087 -
Vifa2g00258 385 SMART c2h2final6 305 331 IPR013087 -
Vifa2g00258 385 SMART c2h2final6 244 265 IPR013087 -
Vifa2g00258 385 SMART c2h2final6 216 241 IPR013087 -
Vifa2g00258 385 SMART c2h2final6 184 208 IPR013087 -
Vifa2g00258 385 SMART c2h2final6 274 299 IPR013087 -
Vifa2g00258 385 SMART c2h2final6 19 42 IPR013087 -
Vifa2g00258 385 SMART c2h2final6 114 138 IPR013087 -
Vifa2g00258 385 Gene3D Classic Zinc Finger 9 89 - -
Vifa2g00258 385 ProSiteProfiles Zinc finger C2H2 type domain profile. 143 173 IPR013087 -
Vifa2g00258 385 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 91 IPR013087 -
Vifa2g00258 385 ProSitePatterns Zinc finger C2H2 type domain signature. 276 299 IPR013087 -
Vifa2g00258 385 PANTHER ZINC FINGER PROTEIN 9 376 - -
Vifa2g00258 385 ProSitePatterns Zinc finger C2H2 type domain signature. 116 138 IPR013087 -
Vifa2g00258 385 SUPERFAMILY beta-beta-alpha zinc fingers 181 209 IPR036236 -
Vifa2g00258 385 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Vifa2g00258 385 Gene3D Classic Zinc Finger 106 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00258 Vifa-Chr2 36680850 36682985 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00258 111 334 C2H2 Transcription Factor Family AT1G72050 50.182 4.09e-93 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa2g00258 zf-C2H2 0.00025 CL0361