Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00255 ATGAAAATCCCTTGTTGTTCGGTGTGCCAAACGCGGTACAACGAAGAAGAACGAGTTCCGCTTCTTCTTCAATGTGGCCATGGCTTCTGCAAAGAGTGTCTTTCTAGAATGTTCTCAGCTTCTTCCGACGCGACTCTCACTTGTCCTCGGTGTCGCCACGTGTCCACCGTCGGTAACTCCGTTCAAGCTTTACGCAAAAACTACGCGGTGCTTTCGTTAATCCACTCCGCCGCGGAAGCTGCTGCCGCCGCTGCCGGAGGTGGTGGTAGAGGTTCGAATTTTGAATGTGATTATACTGATGATGAGGAAGACGGTGACGGTGATGTTGACGACGGTGACGACGAGAAGCGGCGTCGGAACAGCCGTGGCTCGCAGACGTCGAGTTCTGGAGGTTGTGCTCCGGTGATTGAGGTCGGTGTACATCAGGATTTGAAGCTTGTGAGGCGGATTGGGGAAGGGAGGAGAGCTGGTGTGGAGATGTGGACGGCGGTGATCGGAGGTGGACGGTGTCGGCATCATGTGGCGGTGAAGAAGGCGGTTATAATGGAGGGGGTGGATTTGGATTGGATGTTAGGGAAGCTGGAGGATTTGCGTAGGGCTTCGATGTGGTGTAGGAATGTGTGTACTTTTCATGGAGCGATGAAGGTTGAAGAGAGTTTGTGTCTTGTGGTGGATAAATGTTATGGATCGGTTCAATCTGAGATGCAGCGGAATGAAGGAAGACTCACTTTGGAGCAAGTTTTAAGATACGGGGCAGACATTGCACGGGGGGTTGTTGAGCTTCACGCTGCAGGCGTTGTTTGCATGAACTTAAAGCCTTCCAATCTGCTTCTTGATGCAAATGGTCATGCTGTGGTTTCTGATTACGGACTTGCTACAATTCTGAAGAAGCCTTCCTGTTGGAAGGCTCGACCTGAGTGTGACTCCACAAAGATCCATTCCTGTATGGAATGTATAATGCTTAGCCCACATTATACAGCACCTGAGGCTTGGGAGCCTGTGAAGAAGTCATTACATTTGTTTTGGGATGATGGAATAGGTATATCTCCCGAATCAGATGCCTGGAGTTTTGGTTGTACATTGGTGGAGATGTGCACCGGTGCCATTCCTTGGGCTGGCTTGAGTGCAGAGGAAATCTACCGGGCAGTTGTAAAGGCAAAGAAACAACCTCCACAATATGCTAGTGTGGTTGGTGGTGGAATTCCAAGGGAGTTGTGGAAGATGATTGGAGAGTGTTTACAATTCAAACCATCTAAAAGACCTACTTTTAATGCAATGCTGGCAATATTTCTCCGACATTTGCAAGAAATACCTCGTAGCCCTCCTGCAAGCCCTGATAATGACCTTCTTAAGGGCTCTGTATCAAATGTGGCAGAGCCTTCCCCAATACCTGAATTAGAAGTTCCTCAGGACCCAAACCGTCTTCATCAACTTGTGTCTGAAGGGGATGTCACCGGTGTTAGAGACTTCTTGGCAAAGGCTGCATCAGAAAATGAAAGTAACTACATATCTTCACTGCTGGAAGCTCAAAATGCTGATGGACAAACGGCTCTCCATTTGGCCTGTAGACGTGGCAGTGCAGAGCTTGTTGAGACAATTCTGGAGTATCAAGAGGCTAATGTTGATGTCTTGGACAAAGATGGGGATCCTCCTCTTGTTTTTGCCTTAGCAGCTGGATCCCATGAATGTGTTCGTAGCCTTATCAAAAGAAATGCTTGTGTGAGGTCACGGTTGAGAGATGGGCTTGGCCCATCAGTAGCTCATGTCTGTGCCTATCATGGTCAGCCAGATTGTATGCGAGAGTTACTTTTAGCTGGAGCTGATCCCAATGCAGTAGATGATGAAGGTGAATCTGTACTGCACAGGGCAATTGCCAAGAAGTTCACAGACTGTGCTATCGTGATAGTGGAAAATGGAGGCTGTAGATCGATGGCCATCTTGAATTCAAAAAATCTGACGCCGCTGCACTTGTGTGTAGCAACATGGAATGTTTCTGTTGTGAAGAGATGGGTGGAAGTTGCAACTTCTGATGAGATTGCTGAAGCAATTGACATGTCAAGCCCTCTTGGCACTGCCTTGTGCATGGCAGCTGCTTCTAAGAAAGACCATGAAAGTGAGGGGAGAGACTTGGTGCGGATATTGCTTACAGCAGGAGCTGATCCATCTGCTCAAGATTCACAGAATGGGAGGACAGCTTTGCATACAGCTGCTATGACAAATGATGTGGACTTGGTTCAGGTTATTCTTGCTGCTGGTGTTGATGTGAACATTCGCAATGTGCACAACAGTATACCTCTTCACTTGGCCTTAGCTAGGGGTGCAAAGGCATGTGTCGGACTGCTTCTAGCTGCTGGGGCAGATTATAACTTGCAGGATGATGATGGTGATAATGCTTTCCATATAGCAGCAGAAACAGCAAAAATGATACGGGAAAATCTGGACTGGCTTATTGTTATGTTAAAGAATCCCGATGCCGATATTGAAGTCAGAAACCACAGTGGCAAGACATTACGGGACATTTTAGAGGCTCTACCCCGAGAATGGATATCTGAAGATCTGATGGAAGCACTCACAAATAGAGGAGTTCATTTATCTCCTACAATATTTGAAGTGGGAGATTGGGTGAAGTTTAAAAGAACTGTCACAACTCCAACATATGGGTGGCAAGATGCTAGACCAAAGAGTGTTGGCTTTGTGCAAAGTGTTCCAGACAGGGATAATCTCGTTGTTTCATTTTGTTCGGGAGATGTTCATGTTCTGCCAAATGAAGTTGTAAAAGTTGTTCCATTGGACAGGGGACAACATGTACAACTGAAAGAAGATGTAAAAGAGCCTAGGTTTGGTTGGCGTGGGCAGTCACGTGACAGCATTGGGACCGTATTATGTGTTGACGAGGATGGAATCCTCCGTGTTGGGTTTCCTGGAGCATCCAGAGGATGGAAAGCTGACCCAGCAGAGATGGAACGTGTTGAGGAGTTCAAGGTTGGAGATTGGGTTCGTATTCGTCCAACTCTTACATCTGCAAAGCATGGATTAGGATCTGTGACACCAGGAAGCATTGGTATTGTATATTGTATCCGACCTGACAGTAGTCTGTTAATTGAACTGAGCTATCTTCCAAATCCATGGCATTGTGAACCAGAAGAGGTTGAGCATGTTCCTCCTTTTACGATTGGTGATAGGGTCTGTGTGAAGCGTTCTGTCGCAGAACCTAGATATGCTTGGGGTGGTGAGACACATCATAGTGTTGGAAGAATAAGTGAGATTGAGAATGATGGTCTCTTAATAATAGACATACCAAATCGTCCCATACCATGGCAAGCTGATGCATCTGATATGGAGAAAGTGGAAGATTTTAAGGTTGGAGATTGGGTTCGAGTGAAAGCTTCGGTATCTTCTCCAAAATATGGATGGGAGGATATTACAAGGAACAGTATTGGGGTGGGACAAGAAATTCATGTGATGCAATCTGTTACTCAGCCACGGCTTGGGTGGTCTAATGAATCACCAGCTACTGTTGGAAAAATAGTGAGAATTGACATGGATGGTGCTCTCAATGCGAGGGTCACTGGTAGGCAGAGCTTGTGGAAAGTATCTCCTGGAGATGCCGAGCGACTTCCAGGATTTGAGGTTGGGGATTGGGTACGCTCTAAACCAAGCCTGGGAACTAGACCTAGTTATGACTGGAATAGTGTTGGGAGAGAGAGTTTAGCTGTTGTGCATAGTGTACAGGATTCTGGTTATTTGGAGTTGGCTTGCTGTTTCCGTAAAGGGAAGTGGATCACTCATTATACAGATGTTGAAAAGGTTCCTAGCTTTAAAGTTGGGCAGTATGTTAGGTTCCGACTTGGTTTGGTTGAACCTAGGTGGGGTTGGAGAGGAGCTCAGCCTGAATCTCAAGGTATTATAACCAGTATTCATGCAGATGGAGAAGTCAGGGTTGCATTCTTTGGTTTGCCAGGACTGTGGAAAGGTGATCCTTCAGATCTGCAGGCAGAGCAAATCTTTGAAGTGGGAGAGTGGGTGAGATTGAAAGAAAATGCAAATGATTGGAAATCAATTGGGCCAGGTAGTGTTGGCGTTGTTCAAGGAATAGGGTATGAAGGAGATGAAATTGATAGAAGCACTTTTGTTGGCTTTTGTGGGGAGCAGGAAAAATGGGTAGGACCAAGTTCTCATCTTGAAAGAGTTGACAAACTATTTGTGGGACAGAAAATTAAAGTGAAACAATATGTAAAACAACCTAGATTTGGGTGGTCGGGGCACACCCATGCTAGTATTGGTACTATACAAGCAATTGATGCTGATGGAAAGCTTCGAATATACACTCCAGCAGGTTCAAAAACATGGATGTTGGACCCATCAGAAGTTGAGGTGGTAGAAGAGAAGGAGCTTTGTATTGGAGACTGGGTAAAGGTTAGAGCATCAGTTTCAACTCCAACCCACCATTGGGGGGAAGTGAGTCATTCAAGTGTTGGAGTTGTGCATCGGATGGAAGACGATAACCTATGGGTGTCATTCTGTTTTGTGGAGCGGTTATGGCTTTGTAAGGCAAGTGAAATGGAACGGGTTAGGCCGTACAAAGTGGGAGACAAAGTAAAGATCAGAGATGGACTGGTATCGCCGCGGTGGGGATGGGGAATGGAAACCCACGCCAGCAGGGGACAAGTTGTAGGAGTAGATGCAAATGGTAAACTAAGAATAAGGTTCCGATGGAGGGAAGGGAGGCCTTGGATAGGAGATCCTGCTGATATTGCCCTTGATGAAAACTGA 4773 0.4634 MKIPCCSVCQTRYNEEERVPLLLQCGHGFCKECLSRMFSASSDATLTCPRCRHVSTVGNSVQALRKNYAVLSLIHSAAEAAAAAAGGGGRGSNFECDYTDDEEDGDGDVDDGDDEKRRRNSRGSQTSSSGGCAPVIEVGVHQDLKLVRRIGEGRRAGVEMWTAVIGGGRCRHHVAVKKAVIMEGVDLDWMLGKLEDLRRASMWCRNVCTFHGAMKVEESLCLVVDKCYGSVQSEMQRNEGRLTLEQVLRYGADIARGVVELHAAGVVCMNLKPSNLLLDANGHAVVSDYGLATILKKPSCWKARPECDSTKIHSCMECIMLSPHYTAPEAWEPVKKSLHLFWDDGIGISPESDAWSFGCTLVEMCTGAIPWAGLSAEEIYRAVVKAKKQPPQYASVVGGGIPRELWKMIGECLQFKPSKRPTFNAMLAIFLRHLQEIPRSPPASPDNDLLKGSVSNVAEPSPIPELEVPQDPNRLHQLVSEGDVTGVRDFLAKAASENESNYISSLLEAQNADGQTALHLACRRGSAELVETILEYQEANVDVLDKDGDPPLVFALAAGSHECVRSLIKRNACVRSRLRDGLGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAIAKKFTDCAIVIVENGGCRSMAILNSKNLTPLHLCVATWNVSVVKRWVEVATSDEIAEAIDMSSPLGTALCMAAASKKDHESEGRDLVRILLTAGADPSAQDSQNGRTALHTAAMTNDVDLVQVILAAGVDVNIRNVHNSIPLHLALARGAKACVGLLLAAGADYNLQDDDGDNAFHIAAETAKMIRENLDWLIVMLKNPDADIEVRNHSGKTLRDILEALPREWISEDLMEALTNRGVHLSPTIFEVGDWVKFKRTVTTPTYGWQDARPKSVGFVQSVPDRDNLVVSFCSGDVHVLPNEVVKVVPLDRGQHVQLKEDVKEPRFGWRGQSRDSIGTVLCVDEDGILRVGFPGASRGWKADPAEMERVEEFKVGDWVRIRPTLTSAKHGLGSVTPGSIGIVYCIRPDSSLLIELSYLPNPWHCEPEEVEHVPPFTIGDRVCVKRSVAEPRYAWGGETHHSVGRISEIENDGLLIIDIPNRPIPWQADASDMEKVEDFKVGDWVRVKASVSSPKYGWEDITRNSIGVGQEIHVMQSVTQPRLGWSNESPATVGKIVRIDMDGALNARVTGRQSLWKVSPGDAERLPGFEVGDWVRSKPSLGTRPSYDWNSVGRESLAVVHSVQDSGYLELACCFRKGKWITHYTDVEKVPSFKVGQYVRFRLGLVEPRWGWRGAQPESQGIITSIHADGEVRVAFFGLPGLWKGDPSDLQAEQIFEVGEWVRLKENANDWKSIGPGSVGVVQGIGYEGDEIDRSTFVGFCGEQEKWVGPSSHLERVDKLFVGQKIKVKQYVKQPRFGWSGHTHASIGTIQAIDADGKLRIYTPAGSKTWMLDPSEVEVVEEKELCIGDWVKVRASVSTPTHHWGEVSHSSVGVVHRMEDDNLWVSFCFVERLWLCKASEMERVRPYKVGDKVKIRDGLVSPRWGWGMETHASRGQVVGVDANGKLRIRFRWREGRPWIGDPADIALDEN 1590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00255 1590 MobiDBLite consensus disorder prediction 440 469 - -
Vifa2g00255 1590 Pfam RING-type zinc-finger 6 49 IPR027370 -
Vifa2g00255 1590 ProSiteProfiles Ankyrin repeat profile. 728 760 IPR002110 GO:0005515
Vifa2g00255 1590 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Vifa2g00255 1590 FunFam E3 ubiquitin-protein ligase KEG 727 860 - -
Vifa2g00255 1590 ProSiteProfiles Ankyrin repeat profile. 582 614 IPR002110 GO:0005515
Vifa2g00255 1590 SMART ANK_2a 547 576 IPR002110 GO:0005515
Vifa2g00255 1590 SMART ANK_2a 650 681 IPR002110 GO:0005515
Vifa2g00255 1590 SMART ANK_2a 728 757 IPR002110 GO:0005515
Vifa2g00255 1590 SMART ANK_2a 688 723 IPR002110 GO:0005515
Vifa2g00255 1590 SMART ANK_2a 761 790 IPR002110 GO:0005515
Vifa2g00255 1590 SMART ANK_2a 615 646 IPR002110 GO:0005515
Vifa2g00255 1590 SMART ANK_2a 794 829 IPR002110 GO:0005515
Vifa2g00255 1590 SMART ANK_2a 513 543 IPR002110 GO:0005515
Vifa2g00255 1590 SMART ANK_2a 582 611 IPR002110 GO:0005515
Vifa2g00255 1590 Gene3D - 766 860 IPR036770 -
Vifa2g00255 1590 FunFam E3 ubiquitin-protein ligase KEG 228 444 - -
Vifa2g00255 1590 ProSiteProfiles Zinc finger RING-type profile. 6 52 IPR001841 -
Vifa2g00255 1590 SUPERFAMILY Ankyrin repeat 504 805 IPR036770 -
Vifa2g00255 1590 Gene3D - 468 578 IPR036770 -
Vifa2g00255 1590 Pfam Ankyrin repeats (many copies) 585 633 IPR002110 GO:0005515
Vifa2g00255 1590 ProSiteProfiles Ankyrin repeat profile. 761 793 IPR002110 GO:0005515
Vifa2g00255 1590 PRINTS Ankyrin repeat signature 514 529 IPR002110 GO:0005515
Vifa2g00255 1590 PRINTS Ankyrin repeat signature 710 724 IPR002110 GO:0005515
Vifa2g00255 1590 ProSiteProfiles Ankyrin repeat profile. 513 546 IPR002110 GO:0005515
Vifa2g00255 1590 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 84 IPR013083 -
Vifa2g00255 1590 CDD RING-HC_KEG-like 3 59 - -
Vifa2g00255 1590 Gene3D - 579 643 IPR036770 -
Vifa2g00255 1590 FunFam E3 ubiquitin-protein ligase KEG 454 683 - -
Vifa2g00255 1590 ProSiteProfiles Ankyrin repeat region circular profile. 513 535 - -
Vifa2g00255 1590 ProSiteProfiles Protein kinase domain profile. 144 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00255 1590 SUPERFAMILY Protein kinase-like (PK-like) 141 446 IPR011009 -
Vifa2g00255 1590 ProSiteProfiles Ankyrin repeat region circular profile. 728 759 - -
Vifa2g00255 1590 MobiDBLite consensus disorder prediction 96 133 - -
Vifa2g00255 1590 Pfam Ankyrin repeats (3 copies) 704 792 IPR002110 GO:0005515
Vifa2g00255 1590 Pfam Ankyrin repeats (3 copies) 492 573 IPR002110 GO:0005515
Vifa2g00255 1590 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 1148 1589 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
Vifa2g00255 1590 Pfam Protein kinase domain 171 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00255 1590 Gene3D - 644 765 IPR036770 -
Vifa2g00255 1590 ProSiteProfiles Ankyrin repeat region circular profile. 761 793 - -
Vifa2g00255 1590 SMART ring_2 6 51 IPR001841 -
Vifa2g00255 1590 Gene3D Transferase(Phosphotransferase) domain 1 227 447 - -
Vifa2g00255 1590 Pfam Mind bomb SH3 repeat domain 1466 1584 IPR040847 -
Vifa2g00255 1590 Pfam Mind bomb SH3 repeat domain 869 987 IPR040847 -
Vifa2g00255 1590 Pfam Mind bomb SH3 repeat domain 1119 1201 IPR040847 -
Vifa2g00255 1590 Pfam Mind bomb SH3 repeat domain 1336 1457 IPR040847 -
Vifa2g00255 1590 Pfam Mind bomb SH3 repeat domain 993 1113 IPR040847 -
Vifa2g00255 1590 Pfam Mind bomb SH3 repeat domain 1209 1330 IPR040847 -
Vifa2g00255 1590 SUPERFAMILY RING/U-box 5 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00255 Vifa-Chr2 36602282 36621457 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00255 206 427 MAP Kinase Kinase Kinase AT2G31800 29.646 2.76e-16 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Vifa2g00255 Pkinase 2.4e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00255 K16279 - gmx:100777576 2905.93