Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00253 ATGGCTTTCAAAACTAACCAAGACGAAAACGAAGAAAAAACACCATACACAGTAGAACAACAAGAACAAGACGATGATGATGACGACGAAGAAGTTGAAGAACAAGTGTGGGACGATTGGGAAGGAGATGACGGAGATTCAGACTCTGATTTCATCTGTCTCTTCTGTGATTCCAATTTCGATTCATGTAGCTCTTTGTTTCAACATTGCACTTCGGTTCACCACTTCGATTTTCATGCTGTTACAAATTCTCTGAACTTGGATTTCTATGCTTCCTTCAAGCTCATTAACTATATTCGCTCAAAGGTATCAGAGAATAGTTGTTGGAGTTGTGGGTTAGCTTTCCAGTCCAAACATGATTTGCAGAATCACTTGCATGATGTAATTGACTTCAATGCTATTAAGCCTTTGTGGGATGATGATAGATATCTAAAACCTTTCATGCAAGATGATTCATTGCTGTACAACTTTGGTGAATTTGAAGAAGGTGAAGATGAACAAACTTCAATTATGGATGAAGATCTTGTGAGTGAGTTGAAATATGCTTTAGAAACCAACAGTGTGGATCAAGATGCCTTTTCAGATGAGCATTCAAACTTGCCCAGCTCTTCAGCTAAGGAGCTTGTTAATGGAAAGGATTCAAGAGTATGTATGTCATTGTCATCCATTGATAAGGATCGAGAAGAAGGGTCTTTGATGGATAACCCTCATAATCACATTGCAACGCATATTAAGAAGGTTAATGAAAGTTATTTTGGGTCTTACAGCTCATTTGGCATTCATCGAGAGATGTTAAGTGATAAGGCTAGAATGGATGCTTATGGTCAAGCAATTTCGAAGAATCCCTCTCTCCTAAATGGTGCAGTGGTTATGGATGTAGGTTGTGGAACTGGCATACTCAGCCTTTTTGCAGCTCAGGCAGGGGCTTCGAGGGTCATTGCAGTTGAGGCTAGTGCAAAAATGGCAGCAGTTGCATCTCGGGTTGCAAAAGATAACAATCTCTTGTCGAGTAAAAACGAAACTAGAGTCAATGGCAACCAGAAAGGAGTTGTAGAAGTGGTTCATGGCATGGTTGAAGAAATTGACAAAATTGTTGAACTTCAACCTCACAGTGTTGATGTATTGTTAAGTGAATGGATGGGATATTGCTTGCTGTATGAATCCATGCTTGGTTCAGTGCTTTATGCACGTGACCGCTATTTGAAGCCTGGGGGTGCCATTCTTCCCGACACAGCAACTATTTTTGTTGCTGGATTTGGAAAAGGAGGTACAAGTCTTCCATTTTGGGAGAACGTGTGTGATTTTGACATGTCTAGCATTGGGGAGGAGCTTGTTACAGATGCTGCCCGGTATCCTATAGTCGATGTCATAGACCACCAAGATTTAGTTACCAGTTCTACTATTCTTCAGACCTTTGACTTGGCTACCATGAAGCCCGATGAAGTGGATTTCACCGCAACTGCTTCTTTGGAACCAAAATCGAGCACTTCATGTTGCTGGTGTTATGGAGTTGTCCTATGGTTTGATACTGGATTTACAACAAGATTCTGCAAGGAAACTCCGGCCGTGCTATCAACATCCCCTTACACTCCAAAAACACATTGGTCACAAACAATCTTAACTTTCCGGGAACCTATTGCCATTGGAACGGGTGAAGATAATGCGAGAAAACCAGAAACAATTGGCACTGAAGTCTACCCTGCTTCGAAGATTGATCTGCGTGTCAGCATTGTCCGCTCAACTGAGCACCGCAGTATTGACATTTCCATGGAAGCTGCTGGTGTAAGTCCCGATGGCCGGAGACATAGTTGGCCTGTTCAACTTATTTCTCTGCAGTAG 1839 0.4187 MAFKTNQDENEEKTPYTVEQQEQDDDDDDEEVEEQVWDDWEGDDGDSDSDFICLFCDSNFDSCSSLFQHCTSVHHFDFHAVTNSLNLDFYASFKLINYIRSKVSENSCWSCGLAFQSKHDLQNHLHDVIDFNAIKPLWDDDRYLKPFMQDDSLLYNFGEFEEGEDEQTSIMDEDLVSELKYALETNSVDQDAFSDEHSNLPSSSAKELVNGKDSRVCMSLSSIDKDREEGSLMDNPHNHIATHIKKVNESYFGSYSSFGIHREMLSDKARMDAYGQAISKNPSLLNGAVVMDVGCGTGILSLFAAQAGASRVIAVEASAKMAAVASRVAKDNNLLSSKNETRVNGNQKGVVEVVHGMVEEIDKIVELQPHSVDVLLSEWMGYCLLYESMLGSVLYARDRYLKPGGAILPDTATIFVAGFGKGGTSLPFWENVCDFDMSSIGEELVTDAARYPIVDVIDHQDLVTSSTILQTFDLATMKPDEVDFTATASLEPKSSTSCCWCYGVVLWFDTGFTTRFCKETPAVLSTSPYTPKTHWSQTILTFREPIAIGTGEDNARKPETIGTEVYPASKIDLRVSIVRSTEHRSIDISMEAAGVSPDGRRHSWPVQLISLQ 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00253 612 MobiDBLite consensus disorder prediction 1 20 - -
Vifa2g00253 612 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 254 552 IPR029063 -
Vifa2g00253 612 MobiDBLite consensus disorder prediction 21 44 - -
Vifa2g00253 612 Gene3D Vaccinia Virus protein VP39 240 409 IPR029063 -
Vifa2g00253 612 MobiDBLite consensus disorder prediction 1 44 - -
Vifa2g00253 612 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 54 593 IPR025799 GO:0016274|GO:0018216
Vifa2g00253 612 SUPERFAMILY beta-beta-alpha zinc fingers 34 167 IPR036236 -
Vifa2g00253 612 FunFam Protein arginine N-methyltransferase 6 244 409 - -
Vifa2g00253 612 CDD AdoMet_MTases 290 408 - -
Vifa2g00253 612 Gene3D - 411 603 - -
Vifa2g00253 612 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 248 564 IPR025799 GO:0016274|GO:0018216
Vifa2g00253 612 Pfam Methyltransferase domain 290 405 IPR041698 -
Vifa2g00253 612 Pfam C2H2 type zinc-finger (2 copies) 53 127 IPR041661 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00253 Vifa-Chr2 35761319 35765076 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00253 25 611 C2H2 Transcription Factor Family AT3G12270 55.803 0.0 650
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa2g00253 Methyltransf_25 5.3e-09 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00253 K11436 - gmx:100778113 842.417