Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00232 ATGGCATCAATGTCAGCATCTGGTTCATGGAGTGGTAAGGAGAACAAAGCATTTGAAAGGGCATTAGCTGTTTTTGATAAGGACACACCTGATCGTTGGTCCAATGTTGCTAAAGCTGTTGGTGGAGGGAAGACTGCCGAAGATGTTAAGAGACACTATGAACTTCTTCTTAGGGACATTAGGCACATTGAATCTGGTCAAGTTCCATTCCCAAATTACAACAACAATGCTGACCAGAAAAGGTTTAGAAACATGAAACTCCAGTGA 267 0.4195 MASMSASGSWSGKENKAFERALAVFDKDTPDRWSNVAKAVGGGKTAEDVKRHYELLLRDIRHIESGQVPFPNYNNNADQKRFRNMKLQ 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00232 88 CDD SANT 9 57 IPR001005 -
Vifa2g00232 88 SMART sant 6 59 IPR001005 -
Vifa2g00232 88 FunFam Transcription factor SRM1 2 70 - -
Vifa2g00232 88 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 3 80 IPR044636 GO:0003700
Vifa2g00232 88 Pfam Myb-like DNA-binding domain 8 54 IPR001005 -
Vifa2g00232 88 ProSiteProfiles Myb-like domain profile. 8 57 IPR001005 -
Vifa2g00232 88 ProSiteProfiles SANT domain profile. 5 61 IPR017884 -
Vifa2g00232 88 Gene3D - 2 70 - -
Vifa2g00232 88 SUPERFAMILY Homeodomain-like 8 65 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00232 Vifa-Chr2 32530017 32530411 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa2g00232 Myb_DNA-binding 1.6e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00232 - - gmx:100804396 142.51