Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00229 ATGTCCACCACAGCTCCACCACCATCCACCACCGTCACCACAACCACCGCCGGTGTAGGTCTCGGCTACGGCATCGCGATTGCCGTAAGCATCCTCGTCCTCGTCTCAACAATCATGCTCGCTTCCTACATTTGCGTCCGCTTAAAATCTCAAAGCCATCGCAACTCCTTCCACTTCGACACTCGCCTCGGAACTATATCTATAAATCAAAATATTATAAACGGCTCGGGGATTCGTTCCGAACCATCCGGGCCGTTTATCTTGGGCTTAAAAAAACCCGAGGTTGAATCATACCCGAAGATGATACTCGGAGAGAGTCTACGACTGCCGAAGCCGAACGAAGGCCTGTGTTCGATCTGTTTGAATGATTATCTTCCGAAAGAAATGATCCGGTGCGTTCCGGATTGTCAGCATTGTTTTCACGCCGAGTGTGTTGATGAGTGGCTTCGGATGAGTGCTACGTGTCCTCTGTGTCGGAACTCGCCTGCTCCGTCGCCGGTGGCTACTCCGTTGTCGGAGTTTGTTCCTCTGGCTTTTCATGCTAGGTGA 549 0.5155 MSTTAPPPSTTVTTTTAGVGLGYGIAIAVSILVLVSTIMLASYICVRLKSQSHRNSFHFDTRLGTISINQNIINGSGIRSEPSGPFILGLKKPEVESYPKMILGESLRLPKPNEGLCSICLNDYLPKEMIRCVPDCQHCFHAECVDEWLRMSATCPLCRNSPAPSPVATPLSEFVPLAFHAR 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00229 182 SMART ring_2 117 158 IPR001841 -
Vifa2g00229 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 164 IPR013083 -
Vifa2g00229 182 CDD RING-H2_EL5-like 117 159 - -
Vifa2g00229 182 Pfam Ring finger domain 117 159 IPR001841 -
Vifa2g00229 182 PANTHER RING-H2 FINGER PROTEIN ATL67 7 180 IPR044289 GO:0016567|GO:0016740
Vifa2g00229 182 SUPERFAMILY RING/U-box 116 164 - -
Vifa2g00229 182 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00229 Vifa-Chr2 31632649 31633197 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00229 1 182 C3H Transcription Factor Family AT5G07040 57.143 6.22e-65 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00229 - - lja:Lj3g3v0787250.1 239.58