Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00224 ATGGTTGATCAAATTGAGTCATATTCGCCTAATACGTTGGTACAATGTCGAATATGTCATGATGAAGATGAAGACTTAAACATGGATACACCTTGTTCTTGTTCTGGTACATTGCAGTATGCTCATAGAATATGTGTGCAAAGATGGTGCAATGAGAAAGGTGATACTACTTGTGAGATTTGCCAACAGCAATTTAAAGGCTACACTGCTCCTCAAGCTCCTTTGTTTCACTATAGGGGCAACTGGGAAATTCCAAGAGTTGGTTTCAATAATCATCAGTTCATAGCATTGTTTCCTGCTAATCATGAATTTCTAGACTTTAATTTTGAATATTCAGCTCCCTCTACAAGGAGCCGCGTGTTCATTCGCATTGTTGCCATCATTTCAGGAAACAACATCAGTGAGAAGGCTTATGAGGATGGAAGAACAATGGTGGAGAGTAAGACAACAGACCTGAGATCTCAAATCAGGCGAAAAGGTGACACAAACCAAGCTTCAAGTATAAGGAATCCATGGCAGCAATCAGATCAGACACAGTCTCATTCTAATCATGAAACACAACTTAAGAAATCCCGAGACGTGGCATTGGCAACAGCAGCAAAAGCAAAATTACTTCTTCGTGAGCTAAAAACCGTTAAAGCGGATTTAGCATTTGCTAAAGCGCGCTGTGCTCAACTTGAAGAAGAAAATAAATTACTCAGGGAACGAGAAGGAAGCGATAAGGTACTTATCCGTGATGATGATGATCTGGTTGGTTTGGAAAACTCCTTCATTACAAATATTCGACATTGTATTAACATCACACAATCCAATGTTGATTCAGATTATGATGCTAAACCCAGCTTTACACAGATCTTGGTAATCTCATCTATTGGGTTGATATTTTTCATAGCATTGCGTTATCATCTCAAAAAGATTCGAGATCAAAAGATCATTCCGCGTTTAAGATTATCGCGTGCAGGTCACCCCCCAAAGCTTGAAAGATTCTCTCATTACGTAGCTAGGCAAATGGGGTTCAAGGATAGGAGAATCGGTCCTGATATATGTAGATTGGCTTCTGAATACATAAGCAAATATGAAGGGTTTGAAGATGATATATATGCCTATTTTGAGAATGAACCAGATGCTGATTCACTTTATGTCAAGTTGGTGGAAGAGTTTGAGAGATGCATTCTTAGTTACTTTGGATTTCATTGGAACCATTGTGACATATTGATAAGTCAGGTTTTGAGCTCGGACATTTCTAAGCCAAAAAAGAAGCTAAAGAACATAGTTATGGCTGCTACTAGGGATCAAAGGTTCGAGAGAGTTGCCAAGAGTCTGAAGGTGGCTAGTGTTTTTAATACATTAGTGGAAGAGATGAAAGCGATGGGTATTGCAGTAAACGATGACTCTCAATGTACTCACAGTGATAGGAGCCCGGTCCTTCTTCTAATGGGGGGAGGTATGGGAGCTGGCAAGAGCACTGTACTCAAGGATATTCTCAAAGAACCTTTCTGGGCAGGAGCATCAGGAAATGCCGTAGTCATTGTAGCAGATGCCTTCAAAGAATCAGATGTCATCTACAGGGCACTTCGCTCAACAGGTCATCATGACATGATTCGAACAGCCGAATTGGCGGAAAGAAAAAACACAGCTTTTGTAGATGTGTCTCCAGAAGAAACTGTGCAGAAGAATGCTTTTGAAAGATTTAAAGATGTTGATGAATCAAGTTCATTCAAGGAAGCCCGTGCTCTAGCTGAAGCTTCTCAAAATGGAGCTCCTTTTAACCAAGGTTTTGGCAATTCACCCGGTTCTCTATCTGCACGTAAGATTGAAGAAGCTGAAGCACAGTGTGCTTTGTTGAACTCTGAATCATTATGCGATGGATGTTTCAGTTCAGATTCAGATATATTTCTCTTTGGTGCAAGGACAATGTACAGGGAAATCTGCCTTGGAGATGGTGGATATGTTGTATGTTATGAGATGGCAGAGATTGAAAATAAACTTGGATTGGGACGGGATTCATTGATTGCTCTCTCTTTGCTTCTCGGCAGTGACTATCATCAAGGAGTTCATGGTTTAGGTCCGGAGTTAGCTTGTCAGATAGTAAAATCAATTGGGGAGAAAGATGTTCTAAAAAAATTTGCTTCTGAAGGACTTGGATGGGTGAAAAAAAGAAAAGGAGCTAAAAATAATATAGGAAAGGACGATACCATTTTACAAGTGATTGATGCTTATTTGAAGCCAAAATGCCACTCAGCTGATTCAGACTTTGTGCTCAAGGCTCATTCTCAGTATCCATTTCAACGTACTAAGCTCCATCATATATGCGCTGTATACTTCGAATGGCCTTCGGAGAGAACAGATGGATATATCCTTCCATGTATAGCCGAAAGGGATTTACGACGATTTGCCAATTTGCGATCAACTTCGTCTGAACTTGGGTTGAACCTTCCTTTACATGAGGGATTGGAATCACCCGCTGATGGTAGACGTTCATCTGAGTCTAGCTACCGTATTGGAGATAATGGAACTTCAGGGGGGACAAATTAG 2535 0.4047 MVDQIESYSPNTLVQCRICHDEDEDLNMDTPCSCSGTLQYAHRICVQRWCNEKGDTTCEICQQQFKGYTAPQAPLFHYRGNWEIPRVGFNNHQFIALFPANHEFLDFNFEYSAPSTRSRVFIRIVAIISGNNISEKAYEDGRTMVESKTTDLRSQIRRKGDTNQASSIRNPWQQSDQTQSHSNHETQLKKSRDVALATAAKAKLLLRELKTVKADLAFAKARCAQLEEENKLLREREGSDKVLIRDDDDLVGLENSFITNIRHCINITQSNVDSDYDAKPSFTQILVISSIGLIFFIALRYHLKKIRDQKIIPRLRLSRAGHPPKLERFSHYVARQMGFKDRRIGPDICRLASEYISKYEGFEDDIYAYFENEPDADSLYVKLVEEFERCILSYFGFHWNHCDILISQVLSSDISKPKKKLKNIVMAATRDQRFERVAKSLKVASVFNTLVEEMKAMGIAVNDDSQCTHSDRSPVLLLMGGGMGAGKSTVLKDILKEPFWAGASGNAVVIVADAFKESDVIYRALRSTGHHDMIRTAELAERKNTAFVDVSPEETVQKNAFERFKDVDESSSFKEARALAEASQNGAPFNQGFGNSPGSLSARKIEEAEAQCALLNSESLCDGCFSSDSDIFLFGARTMYREICLGDGGYVVCYEMAEIENKLGLGRDSLIALSLLLGSDYHQGVHGLGPELACQIVKSIGEKDVLKKFASEGLGWVKKRKGAKNNIGKDDTILQVIDAYLKPKCHSADSDFVLKAHSQYPFQRTKLHHICAVYFEWPSERTDGYILPCIAERDLRRFANLRSTSSELGLNLPLHEGLESPADGRRSSESSYRIGDNGTSGGTN 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00224 844 SMART xpgineu 591 665 IPR006086 GO:0004518
Vifa2g00224 844 SMART ringv_2 15 62 IPR011016 GO:0008270
Vifa2g00224 844 Pfam Zeta toxin 463 529 IPR010488 GO:0005524|GO:0016301
Vifa2g00224 844 Gene3D - 665 725 - -
Vifa2g00224 844 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 670 685 IPR006084 -
Vifa2g00224 844 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 615 635 IPR006084 -
Vifa2g00224 844 Pfam XPG I-region 606 680 IPR006086 GO:0004518
Vifa2g00224 844 Gene3D - 516 664 - -
Vifa2g00224 844 PANTHER UNCHARACTERIZED 274 543 IPR044802 -
Vifa2g00224 844 MobiDBLite consensus disorder prediction 818 844 - -
Vifa2g00224 844 MobiDBLite consensus disorder prediction 149 190 - -
Vifa2g00224 844 Coils Coil 202 236 - -
Vifa2g00224 844 MobiDBLite consensus disorder prediction 824 844 - -
Vifa2g00224 844 Pfam Protein of unknown function (DUF3675) 67 128 IPR022143 -
Vifa2g00224 844 CDD RING_CH-C4HC3_MARCH 16 62 - -
Vifa2g00224 844 ProSiteProfiles Zinc finger RING-CH-type profile. 8 68 IPR011016 GO:0008270
Vifa2g00224 844 MobiDBLite consensus disorder prediction 159 182 - -
Vifa2g00224 844 SUPERFAMILY RING/U-box 13 66 - -
Vifa2g00224 844 SUPERFAMILY PIN domain-like 606 680 IPR029060 -
Vifa2g00224 844 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 72 IPR013083 -
Vifa2g00224 844 FunFam Flap endonuclease GEN-like 1 665 722 - -
Vifa2g00224 844 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 665 802 IPR036279 -
Vifa2g00224 844 Pfam RING-variant domain 16 61 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00224 Vifa-Chr2 27706557 27716928 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00224 607 701 Core DNA Replication Machinery Family AT5G26680 34.021 1.01e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00224 - - gmx:100794775 418.698