Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00217 ATGAAGAAGAAGCTCGATACCCGTTTTCCGGCCGCTCGGATAAAGAAGATAATGCAAGCAGACGAGGATGTTGGAAAGATAGCATTAGCAGTTCCTGTATTAGTTTCAAAAGCTCTGGAATTATTTCTGCAAGATCTTTGTGACCGCACTTATGAAATAACACTACAGAGAGGAGCAAAGACCATGAACGCATTGCATTTGAAACATTGTGTACAGAGCTACAATGTCTTCGACTTTTTGAGAGACATCGTCAGCAGGGTTCCGGACTATGGGCACGGCCATGGCCATCCTGAGGCTGGAGCTGATGACCGCTCCCTTCCGAAGAGAAGGAAACCTGCTGGCGACGATTGCAATGACAGTGACGAAGAGACTAAGCGGAGTAAGATGCTAGAGTTGGGCCACACCGGCGGTACTGGTAGGGGAAGAGGGAGAGGTAGAGGAAGAGGCCGCGGCCGAGGAGCTCGAACCGCAGAGAAAGAGACCTTACATCAACAGGTTGAGTCCGAACCTTGCACCTCTATTCAACAAAGTAGCAAAGAAGTCCCTAATACAAGTATGGCAATCGATAACGGTCCAGAACCAAAGGAGTTATCAAAGGAAAACATTTCACCTCACGAGGAAAGCACTCGATCTTTCCGAAACATCGATTTAAATGCCAATATACAAGAAAACGAGGACAAAGACAATACAAGTGCGGCTACTCCTCAGGCCTCATTGCCCGAACCTGCTGCAGTAACGGATATGCAACATGAAGAAATTCCAGGTTGGTCTCTTGCTGATGTCGACAAGATGGCAATCGATACGTTACAGCTTGCCGCGAATCTTGGTAATAGACTAGATGAGGAGGAGGAAGATTATGATGAGGAGGAAGGGTAA 876 0.4726 MKKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNALHLKHCVQSYNVFDFLRDIVSRVPDYGHGHGHPEAGADDRSLPKRRKPAGDDCNDSDEETKRSKMLELGHTGGTGRGRGRGRGRGRGRGARTAEKETLHQQVESEPCTSIQQSSKEVPNTSMAIDNGPEPKELSKENISPHEESTRSFRNIDLNANIQENEDKDNTSAATPQASLPEPAAVTDMQHEEIPGWSLADVDKMAIDTLQLAANLGNRLDEEEEDYDEEEG 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00217 291 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Vifa2g00217 291 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 118 - -
Vifa2g00217 291 MobiDBLite consensus disorder prediction 91 245 - -
Vifa2g00217 291 MobiDBLite consensus disorder prediction 166 185 - -
Vifa2g00217 291 MobiDBLite consensus disorder prediction 213 237 - -
Vifa2g00217 291 SUPERFAMILY Histone-fold 3 97 IPR009072 GO:0046982
Vifa2g00217 291 Coils Coil 272 291 - -
Vifa2g00217 291 MobiDBLite consensus disorder prediction 151 165 - -
Vifa2g00217 291 MobiDBLite consensus disorder prediction 193 212 - -
Vifa2g00217 291 MobiDBLite consensus disorder prediction 91 130 - -
Vifa2g00217 291 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Vifa2g00217 291 FunFam dr1-associated corepressor homolog 1 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00217 Vifa-Chr2 27323536 27326554 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00217 1 279 CCAAT-HAP5 Transcription Factor Family AT3G12480 52.397 1.21e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vifa2g00217 CBFD_NFYB_HMF 1.3e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00217 K21752 - gmx:100810093 411.379