Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00216 ATGACATCTGAGTCCTCTAGCATCTCTATCACTTCACAAGATCAAGGTGATTCTTCCCACTCTAAAAATGCGGTGAGCATGGAGATCGAACAAGATCGATCCTCGAATTCCAATTCCAACAATCTAATTGATTTTGTGAAGCTGCCGAAAGACGATTATGTTCCCGGGTTAAAGGTACAAGAGCATGATTTTTTTAATCTTATACAAACTGGTTCATCGTCTTGTCTACCTATTAACGATGCTGAACTGAAAGATGAGAACAATAATAAAGAGAAGAGTCTTGATTTAAGATCTTTTTCATGCTCTTTTTGTAAGAGAAAATTTTCAACTTCGCAAGCATTAGGAGGACATCAAAATGCTCATAAAGCTGAACGCGCTTTAGAAAAACAACGTAAACAAAGGTACGATGATGGTGCTTTAGGTTTAGGGCAATCTCACTTTACCCCTTATTTTAATTATCCAAGCAATCTTTTTACACCTTATAGTTATAACTATAGACTTGGGGTTAGAATGGATTCCACAATTCAAAAACCACCTTATTTTAACCCTAGGACTACCTCACATAGTTTTGGTTATGGCAATGGTGCTTTGAGTCTCCAAGATATGTTAAACCCTTCTCTTGTCTCATTGAGAAATATGGGAGGTGGAAATAGTGGAATTGGAACCCTAGGTATTGGGGGTGCAACTAGTTTAAAAATTAAAGATGGTGGTGCAAATGATAAATTAAGTGCTCTTTTGAAATTCGGAGATTCTTCTACAAATGTTGCTACAAGTTCAAACTCAAACATAGACAAGAAAATCATTCTGGCTTCTACTTCTATCAAAGATGAAATCAAAGATGAAACTAATGATCAATCAAAGTCCAATATTGAAGAAGAACCCTCCAATTCTGAATCTTCTGAACTTGATTTGTCACTTAAGCTTTAA 927 0.3581 MTSESSSISITSQDQGDSSHSKNAVSMEIEQDRSSNSNSNNLIDFVKLPKDDYVPGLKVQEHDFFNLIQTGSSSCLPINDAELKDENNNKEKSLDLRSFSCSFCKRKFSTSQALGGHQNAHKAERALEKQRKQRYDDGALGLGQSHFTPYFNYPSNLFTPYSYNYRLGVRMDSTIQKPPYFNPRTTSHSFGYGNGALSLQDMLNPSLVSLRNMGGGNSGIGTLGIGGATSLKIKDGGANDKLSALLKFGDSSTNVATSSNSNIDKKIILASTSIKDEIKDETNDQSKSNIEEEPSNSESSELDLSLKL 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00216 308 Gene3D Classic Zinc Finger 80 140 - -
Vifa2g00216 308 SUPERFAMILY beta-beta-alpha zinc fingers 97 127 IPR036236 -
Vifa2g00216 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 126 IPR013087 -
Vifa2g00216 308 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 2 308 IPR044246 GO:0009788
Vifa2g00216 308 MobiDBLite consensus disorder prediction 278 308 - -
Vifa2g00216 308 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Vifa2g00216 308 MobiDBLite consensus disorder prediction 1 40 - -
Vifa2g00216 308 MobiDBLite consensus disorder prediction 289 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00216 Vifa-Chr2 27292959 27293885 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00216 97 195 C2H2 Transcription Factor Family AT5G01860 45.192 2.03e-15 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa2g00216 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00216 - - psat:127081686 369.777