Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00211 ATGCTGTATCTATGGTTACTTACCATCAAATTCATATGTTTCTTTCCCTTTGCTTATACAGAATCACTTGATTATAGATATGCTTGTTTAGATCAGTCTTCTGATCATCCATCTCCGAGATATCAAACCAACCTCAACGATTTACTCTCATTACTGTCATCACATTCTGCTAAAAGCAAAGGTTTCGGTCACAGAACTTCAGGTTTTGATGAAACCAATAAGATTTATGGACTATACTTTTGTCGTGGTGATGCGAACGCCACCCTTTGCAACTCGTGCATTGAAAATTCTAGCAAAATGATAAAACAGGTGTGCCCGAATAATGTTTCTGCTGTTTTTTGGTGTCCGTTTTGTCTTCTGAGGTACTCAAATAAGAATTTCTTCGGCAAATTAGATATAAGACCGAGGATTCCTATGTTTGACGCAACGCAGAATTCTACCGGTGAATTTGATAGTGATGCTAGGATTTTGATGAATGGTTTGATAGATATGGGATCAGAAGCACCTTTAATGTTTGGTACGCATATGTTTAACATAAACGGTACTCAAAGAAGATACGGTTGGGTGCAATGTAGCAGAGATATTACTAGCGAGGAATGTAGAACTTGTTTGAGCAATATGATTCAAGAGGTTGAAAAATGTTGCAAGGAGAAGCGATTTTGGAGAATCTTTTCGCCTAGTTGCGTTGTTATGTATGAAACTCAGCCATTCCTTTTGAATGATGTACAGCATGACGCAGTTCCGCCTCAGAAAGCGCCAGAAAAGGATGAAACAAAGTCGTTGACTCTAAAAATAATCATTCCTGTGATCGGAGTGGTAGCAGTAGCGCTATTGGTTTTTAGTATATACTATTACAGGCGCTTAGAACGAAAAAAAGTTGAAAAAGAGATGAAGAACATTGATGCAATGTTCTCTCAAGATCAGACTAACAATGAGGAGAATGTGAACACGGACCTACCTATGATACCTCTGAGTACGATTCTAAAGTGTACCGATAATTTTTCTGATAAATATAAATTGGGGGAAGGTGGATTTGGAGGTGTCTACAAGGGTGTTTTAGCAGACGGAAGGGAAATTGCTGTCAAAAGGCTTTCGAAAACTTCGGTTCAAGGAGTGGAGGAATTTAAGAATGAAGTAATGTTGATTGCGAAATTGCAGCATCGGAACCTTGTGAGATTGCTGGCTTGCTGCATTGAGAAAAAGGAGAAGCTGGTTATCTATGAATACTTACTGAATTCAAGCCTCGATGTTCAGCTACGCGATATGGTAAAGGCGGCACTGTTGAACTGGAAACAACGATTAAACATTATTAACGGGATTGCTAAAGGGCTTCTGTATCTTCATGAAGACTCTAGACTCAGGGTTATTCATCGAGACTTGAAAGCTAGCAATGTACTGTTAGATCATGAAATGAATCCGAAAATCTCAGACTTTGGACTAGCAAGAACATTTGGAGGAGACCAGGGGGAAGGAAATACAGTTAGAATCGTAGGAACTTACGGATACATGGCTCCAGAATATGCTATCGAAGGCTTGTTTTCAGTGAAATCGGATGTTTTCAGCTTTGGTGTTCTTTTGCTAGAGATCATCAGTGGAAAAAGGAACAACAAATTCTATCTTTCAGAGCACGGCCAAAGTCTTCTCACATATGCATGGAACTTCTGGAGTGAAAGCAAAGGTTTAGAATTGATGGATCCATCGATAGCGAATTCATATGATCCTAGTGAAGTGTTGAAGTGCATACAGATTGGCTTATTGTGTGTGCAAGATAATGCAGCTGATAGACCTACAATGTCAAGTGTTGTTCAAATGCTTGGAAGTGACAATGCTACTCTTCCAAGTCCCATATGTTCAGCTTTTTCTGTTGGAAGGGCTACAAATACAATTGAAGGAGGGACTTCATCAAATGCTTCCGCCCCTGTCCCTGTCAACGATGTCAACGAGATAACCTTATCCGAAATTATGCCTAGGTGA 1974 0.3961 MLYLWLLTIKFICFFPFAYTESLDYRYACLDQSSDHPSPRYQTNLNDLLSLLSSHSAKSKGFGHRTSGFDETNKIYGLYFCRGDANATLCNSCIENSSKMIKQVCPNNVSAVFWCPFCLLRYSNKNFFGKLDIRPRIPMFDATQNSTGEFDSDARILMNGLIDMGSEAPLMFGTHMFNINGTQRRYGWVQCSRDITSEECRTCLSNMIQEVEKCCKEKRFWRIFSPSCVVMYETQPFLLNDVQHDAVPPQKAPEKDETKSLTLKIIIPVIGVVAVALLVFSIYYYRRLERKKVEKEMKNIDAMFSQDQTNNEENVNTDLPMIPLSTILKCTDNFSDKYKLGEGGFGGVYKGVLADGREIAVKRLSKTSVQGVEEFKNEVMLIAKLQHRNLVRLLACCIEKKEKLVIYEYLLNSSLDVQLRDMVKAALLNWKQRLNIINGIAKGLLYLHEDSRLRVIHRDLKASNVLLDHEMNPKISDFGLARTFGGDQGEGNTVRIVGTYGYMAPEYAIEGLFSVKSDVFSFGVLLLEIISGKRNNKFYLSEHGQSLLTYAWNFWSESKGLELMDPSIANSYDPSEVLKCIQIGLLCVQDNAADRPTMSSVVQMLGSDNATLPSPICSAFSVGRATNTIEGGTSSNASAPVPVNDVNEITLSEIMPR 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00211 657 Gene3D Phosphorylase Kinase; domain 1 294 409 - -
Vifa2g00211 657 Pfam Salt stress response/antifungal 36 124 IPR002902 -
Vifa2g00211 657 Pfam Salt stress response/antifungal 145 234 IPR002902 -
Vifa2g00211 657 ProSiteProfiles Protein kinase domain profile. 334 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00211 657 Gene3D Transferase(Phosphotransferase) domain 1 411 612 - -
Vifa2g00211 657 Gene3D - 140 237 IPR038408 -
Vifa2g00211 657 Gene3D - 24 127 IPR038408 -
Vifa2g00211 657 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 38 627 - -
Vifa2g00211 657 ProSiteProfiles Gnk2-homologous domain profile. 132 237 IPR002902 -
Vifa2g00211 657 Pfam Protein tyrosine and serine/threonine kinase 338 605 IPR001245 GO:0004672|GO:0006468
Vifa2g00211 657 FunFam Cysteine-rich receptor-like protein kinase 10 138 237 - -
Vifa2g00211 657 SMART serkin_6 334 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00211 657 SUPERFAMILY Protein kinase-like (PK-like) 317 617 IPR011009 -
Vifa2g00211 657 CDD STKc_IRAK 340 605 - -
Vifa2g00211 657 ProSitePatterns Protein kinases ATP-binding region signature. 340 362 IPR017441 GO:0005524
Vifa2g00211 657 ProSiteProfiles Gnk2-homologous domain profile. 23 127 IPR002902 -
Vifa2g00211 657 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 298 409 - -
Vifa2g00211 657 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 410 613 - -
Vifa2g00211 657 FunFam Cysteine-rich receptor-like protein kinase 28 25 126 - -
Vifa2g00211 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00211 Vifa-Chr2 26637776 26640838 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00211 27 657 Receptor kinase-like Gene Family AT4G05200 40.696 3.07e-162 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa2g00211 PK_Tyr_Ser-Thr 2.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00211 - - gmx:100798691 881.708