Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00201 ATGTTTGATGCAACACAAAATTTAACTAGTGCCGGTGAATTTGATAGTGATGCAAGGATTTTGATGAATGGTTTGATACAGATGGGGTCACAGACACCTTTGATGTTTGGTACACATATGTTTAACATAAATGGTACTCAAAGAAGGTATGGTTGGGTACAGTGTAGTAGAGATATTACTAGTGAGGAATGTGGAACTTGTTTGAGTAATATGCTCGAGGATGTTGAGAATTGTTGCGAGGAGAAGAAAGTGTGGAGAGTTTTTTCTCCAAGTTGTATTATGATGTATGAAACTCAGCCATTCTTTCTAAATGATTCTAATGCTCCTGCGCCTCAACAAGCCAAAGAAAAGGACGGAACGAAGTCATGGATCATAATAGTCATTGTAGTAATCGGAACAGTAGTAGCAGCTCTACTCGCTTTGAGCGCATACTATTTATGCGGCTTAAAGCATAGAAAAAATAGAAGAAACTATATGCAAAACCTTAGTCCAATCTTTTCTCAAGATCAGTCTGACATCGAGGAAACTGGAAATAGTGACCTATCTATGATGCCTTTGAGTACTATTCTGAAAAGTACGAACAATTTTAGTGATGAATATAAATTAGGGAAATGTGGATTTGGAACTGTTTACAAGGGTGTTTTAGCTGATGGAAAGGAAATTGCTGTTAAAAGGTTTTCAAAAACATCAGTTCAAAGTGTGGAGGAATTAAAAAATGAAACAATATTGACTGCCAAACTGCAGCATCGGAACCTTGTGAGACTATTGGCTTGCTGCATTGAGCAAAATGAAAAGCTTCTTATCTATGAATACTTGCCTAATTCAAGCCTTGATTTCCACCTATTCGATATGGTGAAGGGTGCACAACTAGATTGGAAACAACGATTAAGTATTATTAATGGGATTGCAAAAGGGCTTCTATATCTTCATAGAGACTCTAGGCTCAAAGTTATTCATAGAGACTTGAAGGCTAGCAATATACTGTTAGATCATGAAATGAATCCGAAAATCTCAAACTTTGGACTAGCAAGAATATTTGGAGGAGACCAGGATGAAGCAAGTACAACTAGAATCGTAGGAACTTATGGATACATGGCTCCAGAATATGCTATGGAAGGATTATTTTCGGTGAAGTCAGATGTTTTCAGCTTTGGTGTTCTTTTGCTAGAGATCATCAGTGGAAGAAAAAGCAGCAAATTCTATCTTTCAGAGGATGGACTGAGCCTTCTCGTATATGCATGGAACCTTTGGCGTGAAAGAAAAGAAACAGAGTTGATGGATCCATTGATAGAAAAGACATGCGTACCTGGTGAATATCTGAAGTGTATACATATTGCACTATTGTGTGTACAAGAAGATGCAGCAGATAGACCTACAATGTCAAGTGTTGTTCACATGCTTGTAAGTGACACACTGACTCTCCCCGATCCTACACGCCCTGCATTTTCTGTTGGAAGAGCTGTCGTCGAACGGGCTGTTGTTGACCGAGAGTCTTCATCAAATACTTCTATCTCTGCCAATGAAGTAACCTTGTCTGAATTGAGTCCTAGATGA 1554 0.3842 MFDATQNLTSAGEFDSDARILMNGLIQMGSQTPLMFGTHMFNINGTQRRYGWVQCSRDITSEECGTCLSNMLEDVENCCEEKKVWRVFSPSCIMMYETQPFFLNDSNAPAPQQAKEKDGTKSWIIIVIVVIGTVVAALLALSAYYLCGLKHRKNRRNYMQNLSPIFSQDQSDIEETGNSDLSMMPLSTILKSTNNFSDEYKLGKCGFGTVYKGVLADGKEIAVKRFSKTSVQSVEELKNETILTAKLQHRNLVRLLACCIEQNEKLLIYEYLPNSSLDFHLFDMVKGAQLDWKQRLSIINGIAKGLLYLHRDSRLKVIHRDLKASNILLDHEMNPKISNFGLARIFGGDQDEASTTRIVGTYGYMAPEYAMEGLFSVKSDVFSFGVLLLEIISGRKSSKFYLSEDGLSLLVYAWNLWRERKETELMDPLIEKTCVPGEYLKCIHIALLCVQEDAADRPTMSSVVHMLVSDTLTLPDPTRPAFSVGRAVVERAVVDRESSSNTSISANEVTLSELSPR 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00201 517 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 52 517 - -
Vifa2g00201 517 FunFam Cysteine-rich receptor-like protein kinase 10 154 271 - -
Vifa2g00201 517 Pfam Salt stress response/antifungal 6 98 IPR002902 -
Vifa2g00201 517 FunFam Cysteine-rich receptor-like protein kinase 10 1 101 - -
Vifa2g00201 517 CDD STKc_IRAK 202 467 - -
Vifa2g00201 517 Gene3D Transferase(Phosphotransferase) domain 1 272 473 - -
Vifa2g00201 517 ProSitePatterns Serine/Threonine protein kinases active-site signature. 317 329 IPR008271 GO:0004672|GO:0006468
Vifa2g00201 517 SMART serkin_6 196 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00201 517 SUPERFAMILY Protein kinase-like (PK-like) 182 483 IPR011009 -
Vifa2g00201 517 Gene3D - 2 101 IPR038408 -
Vifa2g00201 517 ProSiteProfiles Protein kinase domain profile. 196 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00201 517 Pfam Protein tyrosine and serine/threonine kinase 200 467 IPR001245 GO:0004672|GO:0006468
Vifa2g00201 517 ProSiteProfiles Gnk2-homologous domain profile. 1 101 IPR002902 -
Vifa2g00201 517 FunFam Liguleless narrow1 272 475 - -
Vifa2g00201 517 Gene3D Phosphorylase Kinase; domain 1 159 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00201 Vifa-Chr2 26237374 26240025 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00201 45 517 Receptor kinase-like Gene Family AT4G21410 47.305 7.24e-140 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa2g00201 PK_Tyr_Ser-Thr 4.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00201 - - gmx:100798691 778.859