LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa2g00196	ATGTTTCATCTATGGTTATTTACCATCAAATTCATATACCTTTTCTATTTTGCTGTAGGCCAAACCAACACCAATTCACAAGAACTACTTGATTATAGATATGATTGTTTGGACCAATCTTCTACTCCTCTCTCTACAACATATCAAACCAACCTCAACAGTTTAATCTCTTCATTGTCATCAGATTCTGCAACAAGTAATGGTTTTGGAAATAAGACTTCAGGTAGTGATCAAAACAATATAGTTTACGGGCAATACCTGTGTCGCGGCGATGTTAATACAAGTCTTTGCCATTCATGTGTCCAAAACTCTAGCAGATTGCTGAAACAACACTGTCCTAATAATGCTTCAGCAATTTTGTGGTACCCTTTTTGTCTTTTAAGGTACTCAAATCAGAATTTCTTTAGTAACCTTACTATAAGACCAAGGATTCCTATGTTTGATGCAACACAAAATTTAACTAGTGCCGGTGAATTTGATAGTGATGCAAGGATTTTGATGAATGGTTTGATACAGATGGGGTCACAGACACCTTTGATGTTTGGTACACATATGTTTAACATAAATGGTACTCAAAGAAGGTATGGTTGGGTACAGTGTAGTAGAGATATTACTAGTGAGGAATGTGGAACTTGTTTGAGTAATATGCTCGAGGATGTTGAGACTTGTTGCGAGGAGAAGAAAGTGTGGAGAGTTTTTTCTCCAAGTTGTATTATGATGTATGAAACTCAGCCATTCTTTCTAAATGATTCTAATGCTCCTGCGCCTCAACAAGCCAAAGAAAAGGACGGAACGAAGTCATGGATCATAATAGTCATTGTAGTAATCGGAACAGTAATAGCAGCTCTACTCGCTTTGAGCGCATACTATTTATGCGGCTTAAAGCATAGAAAAAATAGAAGAAACTATATGCAAAACCTTAGTCCAATCTTTTCTCAAGATCAGTCTGACATCGAGGAAACTGGAAATAGTGACCTATCTATGATGCCTTTGAGTACTATTCTGAAAAGTACGAACAATTTTAGTGATGAATATAAATTAGGGAAATGTGGATTTGGAACTGTTTACAAGGGTGTTTTAGCTGATGGAAAGGAAATTGCTGTTAAAAGGCTTTCAAAAACATCAGTTCAAAGTGTGGAGGAATTAAAAAATGAAACAATATTGACTGCCAAACTGCAGCATCGGAACCTTGTGAGACTATTGGCTTGCTGCATTGAGCAAAATGAAAAGCTTCTTATCTATGAATACTTGCCTAATTCAAGCCTTGATTTCCACCTATTCGATATGGTGAAGGGTGCACAACTAGATTGGAAACAACGATTAAGTATTATTAATGGGATTGCAAAAGGGCTTCTATATCTTCATAGAGACTCTAGGCTCAAAGTTATTCATAGAGACTTGAAGGCTAGCAATATACTGTTAGATCATGAAATGAATCCGAAAATCTCAAACTTTGGACTAGCAAGAATATTTGGAGGAGACCAGGATGAAGCAAGTACAACTAGAATCGTAGGAACTTATGGATACATGGCTCCAGAATATGCTATGGAAGGATTATTTTCGGTGAAGTCAGATGTTTTCAGCTTTGGTGTTCTTTTGCTAGAGATCATCAGTGGAAGAAAAAGCAGCAAATTCTATCTTTCAGAGGATGGACTGAGCCTTCTCGTATATGCATGGAACCTTTGGCATGAAAGAAAAGAAATAGAGTTGATGGATCCATTGATAGAAAAGACATGCGTACCTGGTGAATATCTGAAGTGTATACATATTGCACTATTGTGTGTACAAGAAGATGCAGCAGATAGACCTACAATGTCAAGTGTTGTTCACATGCTTGTAAGTGACACACTGACTCTCCCCGATCCTACACGCCCTGCATTTTCTGTTGGAAGAGCTGTCGTCGAACGGGCTGTTGTTGACCGAGAGTCTTCATCAAATACTTCTATCTCTGCCAATGAAGTAACCTTGTCTGAATTGAGTCCTAGATGA	1989	0.3771	MFHLWLFTIKFIYLFYFAVGQTNTNSQELLDYRYDCLDQSSTPLSTTYQTNLNSLISSLSSDSATSNGFGNKTSGSDQNNIVYGQYLCRGDVNTSLCHSCVQNSSRLLKQHCPNNASAILWYPFCLLRYSNQNFFSNLTIRPRIPMFDATQNLTSAGEFDSDARILMNGLIQMGSQTPLMFGTHMFNINGTQRRYGWVQCSRDITSEECGTCLSNMLEDVETCCEEKKVWRVFSPSCIMMYETQPFFLNDSNAPAPQQAKEKDGTKSWIIIVIVVIGTVIAALLALSAYYLCGLKHRKNRRNYMQNLSPIFSQDQSDIEETGNSDLSMMPLSTILKSTNNFSDEYKLGKCGFGTVYKGVLADGKEIAVKRLSKTSVQSVEELKNETILTAKLQHRNLVRLLACCIEQNEKLLIYEYLPNSSLDFHLFDMVKGAQLDWKQRLSIINGIAKGLLYLHRDSRLKVIHRDLKASNILLDHEMNPKISNFGLARIFGGDQDEASTTRIVGTYGYMAPEYAMEGLFSVKSDVFSFGVLLLEIISGRKSSKFYLSEDGLSLLVYAWNLWHERKEIELMDPLIEKTCVPGEYLKCIHIALLCVQEDAADRPTMSSVVHMLVSDTLTLPDPTRPAFSVGRAVVERAVVDRESSSNTSISANEVTLSELSPR	662

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa2g00196	662	FunFam	Cysteine-rich receptor-like protein kinase 10	144	246	-	-
	Vifa2g00196	662	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	462	474	IPR008271	GO:0004672\|GO:0006468
	Vifa2g00196	662	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	42	662	-	-
	Vifa2g00196	662	Pfam	Salt stress response/antifungal	151	243	IPR002902	-
	Vifa2g00196	662	Pfam	Salt stress response/antifungal	43	132	IPR002902	-
	Vifa2g00196	662	Gene3D	Phosphorylase Kinase; domain 1	304	416	-	-
	Vifa2g00196	662	Gene3D	-	30	134	IPR038408	-
	Vifa2g00196	662	Gene3D	-	145	246	IPR038408	-
	Vifa2g00196	662	FunFam	Cysteine-rich receptor-like protein kinase 10	299	416	-	-
	Vifa2g00196	662	ProSiteProfiles	Gnk2-homologous domain profile.	30	134	IPR002902	-
	Vifa2g00196	662	SUPERFAMILY	Protein kinase-like (PK-like)	327	628	IPR011009	-
	Vifa2g00196	662	Gene3D	Transferase(Phosphotransferase) domain 1	417	618	-	-
	Vifa2g00196	662	CDD	STKc_IRAK	347	612	-	-
	Vifa2g00196	662	Pfam	Protein tyrosine and serine/threonine kinase	345	612	IPR001245	GO:0004672\|GO:0006468
	Vifa2g00196	662	FunFam	Cysteine-rich receptor-like protein kinase 28	32	133	-	-
	Vifa2g00196	662	ProSiteProfiles	Protein kinase domain profile.	341	613	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa2g00196	662	SMART	serkin_6	341	614	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa2g00196	662	FunFam	Liguleless narrow1	417	620	-	-
	Vifa2g00196	662	ProSiteProfiles	Gnk2-homologous domain profile.	141	246	IPR002902	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa2g00196	Vifa-Chr2	26058414	26061501	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa2g00196	8	627	Receptor kinase-like Gene Family	AT4G05200	42.434	2.21e-168	496

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vifa2g00196		PK_Tyr_Ser-Thr	4.4e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa2g00196	-		-	gmx:100798691	993.416