Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00189 ATGTTAGAGAAAGTTCCTAAATGTTGTGGGACAAAAATTGGTTGGCAAGTTCTTGCTCCAAGTTGTTTGATTAAGCATGATGATTTTATCTTCTATCAACTTATTTCTCAAACTTCTCAACCTTTGCATGATTCAGCTGAGAAAGGAGGTTCAAGTAAGCCAAATACCTTAATTATCATCATTGTCATTTCTTTGGTGGTTTCACTTGCTCTCATGAGTTTCTGCATTTACTTCATATGGAGGAAATATCATTCAAATAAAGATGGATTGGTGTCAAAGACAATTACTACATCACATCATGGTGATATTAAAAGATATGATCCCTTACATGTTGACCTTCCAATAATCCCTTTAATTTGGATTCGAAAAAGTACTAATGACTTTTCAGAATCATGTAAATTAGGAGAAGGTGGATTTGGCCCTGTTTACAAGGGTAATTTATTAGATGGAACAGAAATTGCAATTAAAAGACTCTCTATAACATCTGGTCAAGGTTCAGAAGAGTTTAAGAATGAAGTAATCTTTATAGCTAAATTACAACATAGAAACCTTGTGAGACTCTTGGGTTGCTGCATTGAGGATAATGAAAAGTTGCTTGTATATGAATACATGCCAAATTCAAGCCTTGACTTTCATCTATTTGATGAAGAAAAAAGAAAAGTTTTAGATTGGAAGTTAAGAATGAACATTATTAATGGAATTGCAAAAGGACTCTTGTACCTTCATGAAGACTCTAGACTTAGAGTAATCCATAGAGACCTAAAAGCTAGTAATGTTCTTCTAGATCAAGATATGAATCCAAAAATATCTGATTTTGGATTAGCAAGGTCATTTGAAAAAGACCAAAGTCAAGAAAATACAAGAAGAGTTGTGGGCACCTATGGATACATGTCTCCAGAATATGCTATGGAAGGATTATATTCAGTGAAATCTGATGTTTTCAGCTTTGGAGTTCTTTTATTAGAAATAGTTTGTGGAAAAAGAAATGGTGGGTTTTATCTTGCAGAGCATGGTCAAAGTCTTCTTATATATAGTTGGAATCTTTGGTGTGAAGGAAAAAGTATGGAACTTTTGGATGCAATACTAAAAGAGACATACATAGAAAATGAAGTTAAGAAGTGTGTACACATTGGTTTATTGTGTGTACAAGAAGATGCAATTGATAGACCAACCATGTCCAATGTTGTTGTCATGTTGGCAAGTGAGACAATGACACTTCCCACTCCTAATCAACCTGCATTTTCAGTTGGAAGAAAAGTAGTTGAAGATGAATCAACGTCAAAATCTTCCCATAATGTTTCTATAAATGAAGTTACAATATCAAATGTCTTTCCTAGATAG 1341 0.3348 MLEKVPKCCGTKIGWQVLAPSCLIKHDDFIFYQLISQTSQPLHDSAEKGGSSKPNTLIIIIVISLVVSLALMSFCIYFIWRKYHSNKDGLVSKTITTSHHGDIKRYDPLHVDLPIIPLIWIRKSTNDFSESCKLGEGGFGPVYKGNLLDGTEIAIKRLSITSGQGSEEFKNEVIFIAKLQHRNLVRLLGCCIEDNEKLLVYEYMPNSSLDFHLFDEEKRKVLDWKLRMNIINGIAKGLLYLHEDSRLRVIHRDLKASNVLLDQDMNPKISDFGLARSFEKDQSQENTRRVVGTYGYMSPEYAMEGLYSVKSDVFSFGVLLLEIVCGKRNGGFYLAEHGQSLLIYSWNLWCEGKSMELLDAILKETYIENEVKKCVHIGLLCVQEDAIDRPTMSNVVVMLASETMTLPTPNQPAFSVGRKVVEDESTSKSSHNVSINEVTISNVFPR 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00189 446 ProSiteProfiles Protein kinase domain profile. 128 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00189 446 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 93 203 - -
Vifa2g00189 446 FunFam Liguleless narrow1 204 407 - -
Vifa2g00189 446 SMART serkin_6 128 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00189 446 CDD STKc_IRAK 134 399 - -
Vifa2g00189 446 SUPERFAMILY Protein kinase-like (PK-like) 111 425 IPR011009 -
Vifa2g00189 446 Gene3D Transferase(Phosphotransferase) domain 1 204 409 - -
Vifa2g00189 446 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 39 442 - -
Vifa2g00189 446 Pfam Domain of unknown function (DUF3403) 401 446 IPR021820 GO:0004674
Vifa2g00189 446 Gene3D Phosphorylase Kinase; domain 1 91 203 - -
Vifa2g00189 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 249 261 IPR008271 GO:0004672|GO:0006468
Vifa2g00189 446 Pfam Protein tyrosine and serine/threonine kinase 132 398 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00189 Vifa-Chr2 24940594 24957438 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00189 1 446 Receptor kinase-like Gene Family AT4G05200 46.154 3.92e-142 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa2g00189 PK_Tyr_Ser-Thr 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00189 - - mtr:25490357 695.656