LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa2g00184	ATGGAGGCTTTTGTTGGAGCACTTCTCTCAGCTTCTATGGATATGTTCCTGAAAAAGATTGCTTCTGGTGAGTTTGCTGATTTATTTCGGAGGACTCAGCTTGACGAAGCATTGTTGGATGAGATAGATACAACTATGGCGAGTCTTCAATCTCTACTTCATGATGCTGAGAACAAGCAGATCAATAATCCTGGGGTGAAGAAGTGGCTGAATAAGTTGCATGATGCTGTCTTTGAAGCTGAAGATTTGTTTGATGAAATCAACACTGAGGCATTGCGGCGCAGTGCGGAAGCTAATCAGGTTCTTAAAAAGTTTTCTTCTTATTTCAAAAGGTTTAATAAAGAGATCAATTCTAAACTGTCAAAGTTATCTGCAAAACTGAAACACGTGAAAAACCAAAATCCTGGATTGAACGTAGCTGATTTTTCCACCTTTGTTGTGAATGTAACTCCTACAACTCCTTTTTTGGTAAAAGAAACAGATATTAAGGGTAGGCTCGATGACAAAAATAAACTTAAGGAGTTTCTGCTGTCAGAGGATGGTTGTGATAGTGAACAAAAAATAGGAGTGATTTCCATTGTAGGCATGGGTGGGTTAGGAAAAACAACACTAGCTAAACTCCTTTACAATGATGATCATGTGAAGGACAAGTTTAAGGTGAGAGGGTGGTCACACATTCCAAAAAAGTTAGATCTTGTCACTGTCGCTAAAACTATTCTTGAGTCTGTCACTTCAGAAACAATCACAGAGACTAACTTTGTTAAACTCCAACTGCAATTGGAGCAAAGTTTAAGTAACAAAAAGTTTTTGTTAGTATTGGATGATATGTCGCATGGAAACTATGTTGATTGGAATAGTCTAAGTGATATCTTTAATGTTGGGCAAACAGGAAGTAAGATCATCATCACAACTCGAGATGAAAGAGTTTTACTACCCAGGCTAAAATCTCTTGATGTCCACCATTTAAGATATTTGGGAAGTGAAGAATCCTGGTCTTTACTAGCCACACATGCATTTGTAGAAAAAAACTGCGAACAATACCCCAATCTAGAAAAAGTTGGTATAGAAATTGCCAAAAAATGTTGTGGTTTACCATTAGCTGTAGTAGCACTTGGGGGTATTCTTCGCCAAAAATTGTCACTTGATCATTGGAGTGATGTGTTAAACAGTAGTATTTGGGAACGGACAAGTGGTGATGTGCAACCATCTCTACTATTGAGCTATCGTTACCTTCCAGCTTATCTAAAAGGATGCTTTGCCTTTTGTTCAATTTTTCCAAAGAACTCAATCTTAGGGAAAGAGACGATGGTTCAGTTGTGGATTGCAGAAGGCTTAATAGCTCAGCCGAAAAGTGAGAAAAGTTGGGAAAAAGTAGCTGAAGAATACTTAGATGAGCTAGTGTCGAGGTCTTTGATACGTGAACAGTTCATTGATGATGAGTCAAAAGATTTCTTTGGTGATGAGGAAGTTTACTATGAAATGCACGACCTGATTAATGATTTAGCTATGGCAGTCTCATCTCCATATTGCACTAGGCTAGACAAATATAAGCCAGATGAAAGTGTAGATAAAAGCGCGAGACACTTGTCTTTCGACAGTGAAGAATATGATTCATACGATAAATTTGAAAAATTCCATGGATTAAAAGGTTTACAAACCTTTGTATCTCTCCCATTGCAAGAATCATATAGGTATGCTGATTTTGTATCGTCCAAGTTACTTTCTGACCTATTTTCAACAATGACACAATTACACGTGTTGTCATTTTCAAACTACCAAGATATCACTGAATTGCCCAACTCTATTGAAAATTTGATATATCTGCGATACTTGAATCTCTCTAACACTAGGATTAAAAGGTTGCCTTCAAAAACATGCAAGCTTTACAATTTGCAGACTTTATTGTTGTCATGGTGCTACGAACTCACTGAATTGCCAAAGGACATGGGGAAATTGGAGAAACTACGCCACCTTGACATCAGAGGCACTAAGTTGAAGGAAATGCCTGTACAAATTTCCAAATTAGAAAATCTGCAGATATTGTCGGACTTTATTGTTAGCGGCATTAACGAAGTTGGATTGAAGATTGAAGATCTTGGAAAATATCCCCATCTTCGGGGAAGTCTTTCCATCTCAAAACTTGAAAATGTAATTGACCCATCCCATGCTTGTGAAGCAAATTTGGAGATGAAGAAAGAAATTGACAAGTTGAGACTAAAATGGTCTGATACCGCTCCTTCAAACTCAGAAACACAAAGTGTTGTATTGGAACAGCTACGTCCGCCAAGAAGTTTGAAGCGTCTGATCATCTCCGGATACAGTGGTGACAAATTACCAAATTGGTTGGGCGATCCTTTGATGATTAGTCTAAATTCTCTTCAAAAGATAACCTTAGACAACATTCCATCTCTAACATCCTTTCCGAGAGACGGTCTTCCCAAAACCTTACAATCTATCATGATTCTTAGATGTGGGAATTTGGAGTTCCTTTCTCATGAATCTTTTCACAAATACACATCACTGGAGAATTTGGAAATAAGCTATAGTTGTGATCCAATGAATTCGTTTACCTTGTGCTCTTTCCCTGTCCTAAAAAAACTAGATATTGTTGGTTGTTATCATTTAAAATCCATATTAATTGCAGAAGAAGCATCGAAAGAGAATCTCTTGTTTCTTAAAACCATCCAAGTACATAGTTGCTATGAACTGGAGTCGGTTTCCCTAAGCGGATTGCCAATTCCTAACCTCAGTCGTCTAACTGTGTGGAATTGTAACAAGTTACGTTCTCTACCTGAATCAATAAAGACTCTAACTAGCCTGCAATTCATGGAGATTGGCCACCTTCCAAATCTGCAATCGTTTTCCATAGATGATTTGCCTATCAGCTTACAGGAATTGGAGGTTACAGATGTTGGAGGGATTTTGGGGAATACAACTTGGGAACATCTCACTTCTCTTTCAAAGCTGGATATTCGGGGTGATGATGATATTGGGAAGGCGCTGATGAATATGGAAGTTCTATTTCAACCCACTAATCTTGATTCCTTATATATCTCTTTTCTTGAAGATATAGAATGCCTGGGGAAGTGGCTTCAACATCTCACCTCTCTCCATACGCTTCATATTGAGTATGCACCCAAGCTAAAGTCGTTGCCAGAAAAGGGGGAGTTGCCTTCCTCTCTTAAAGAATTGCATATCAGACGGTGTCCGTTATTGAAAGAAAACTTGCAGAGGAAGCAAGGGATAGAGTGGAGTAAGATTTCTCACATTCCCAAAATATATATAGACTACCAAATCATCCAAGTTTTGGCTCCATTTGGGTTCAAATTGAAATGA	3336	0.3816	MEAFVGALLSASMDMFLKKIASGEFADLFRRTQLDEALLDEIDTTMASLQSLLHDAENKQINNPGVKKWLNKLHDAVFEAEDLFDEINTEALRRSAEANQVLKKFSSYFKRFNKEINSKLSKLSAKLKHVKNQNPGLNVADFSTFVVNVTPTTPFLVKETDIKGRLDDKNKLKEFLLSEDGCDSEQKIGVISIVGMGGLGKTTLAKLLYNDDHVKDKFKVRGWSHIPKKLDLVTVAKTILESVTSETITETNFVKLQLQLEQSLSNKKFLLVLDDMSHGNYVDWNSLSDIFNVGQTGSKIIITTRDERVLLPRLKSLDVHHLRYLGSEESWSLLATHAFVEKNCEQYPNLEKVGIEIAKKCCGLPLAVVALGGILRQKLSLDHWSDVLNSSIWERTSGDVQPSLLLSYRYLPAYLKGCFAFCSIFPKNSILGKETMVQLWIAEGLIAQPKSEKSWEKVAEEYLDELVSRSLIREQFIDDESKDFFGDEEVYYEMHDLINDLAMAVSSPYCTRLDKYKPDESVDKSARHLSFDSEEYDSYDKFEKFHGLKGLQTFVSLPLQESYRYADFVSSKLLSDLFSTMTQLHVLSFSNYQDITELPNSIENLIYLRYLNLSNTRIKRLPSKTCKLYNLQTLLLSWCYELTELPKDMGKLEKLRHLDIRGTKLKEMPVQISKLENLQILSDFIVSGINEVGLKIEDLGKYPHLRGSLSISKLENVIDPSHACEANLEMKKEIDKLRLKWSDTAPSNSETQSVVLEQLRPPRSLKRLIISGYSGDKLPNWLGDPLMISLNSLQKITLDNIPSLTSFPRDGLPKTLQSIMILRCGNLEFLSHESFHKYTSLENLEISYSCDPMNSFTLCSFPVLKKLDIVGCYHLKSILIAEEASKENLLFLKTIQVHSCYELESVSLSGLPIPNLSRLTVWNCNKLRSLPESIKTLTSLQFMEIGHLPNLQSFSIDDLPISLQELEVTDVGGILGNTTWEHLTSLSKLDIRGDDDIGKALMNMEVLFQPTNLDSLYISFLEDIECLGKWLQHLTSLHTLHIEYAPKLKSLPEKGELPSSLKELHIRRCPLLKENLQRKQGIEWSKISHIPKIYIDYQIIQVLAPFGFKLK	1111

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa2g00184	1111	Coils	Coil	113	133	-	-
	Vifa2g00184	1111	SUPERFAMILY	L domain-like	494	1069	-	-
	Vifa2g00184	1111	PANTHER	DISEASE RESISTANCE PROTEIN RP	39	924	IPR044974	GO:0006952
	Vifa2g00184	1111	Gene3D	-	149	313	IPR027417	-
	Vifa2g00184	1111	Gene3D	-	408	504	IPR036388	-
	Vifa2g00184	1111	Gene3D	-	17	128	-	-
	Vifa2g00184	1111	Gene3D	Ribonuclease Inhibitor	559	959	IPR032675	-
	Vifa2g00184	1111	PRINTS	Disease resistance protein signature	190	205	-	-
	Vifa2g00184	1111	PRINTS	Disease resistance protein signature	981	997	-	-
	Vifa2g00184	1111	PRINTS	Disease resistance protein signature	263	277	-	-
	Vifa2g00184	1111	PRINTS	Disease resistance protein signature	361	375	-	-
	Vifa2g00184	1111	Pfam	NB-ARC domain	168	390	IPR002182	GO:0043531
	Vifa2g00184	1111	Pfam	Rx N-terminal domain	24	101	IPR041118	-
	Vifa2g00184	1111	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	144	422	IPR027417	-
	Vifa2g00184	1111	Coils	Coil	39	59	-	-
	Vifa2g00184	1111	Gene3D	-	324	407	IPR042197	-
	Vifa2g00184	1111	Gene3D	Ribonuclease Inhibitor	960	1089	IPR032675	-
	Vifa2g00184	1111	FunFam	Probable disease resistance protein At1g63360	408	504	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa2g00184	Vifa-Chr2	24679531	24682955	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa2g00184	595	681	WRKY Transcription Factor Family	AT4G12020	43.182	1.97e-10	63.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa2g00184	-		-	mtr:11420476	954.125