Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00183 ATGGGTTTTGAACCGTTGATTTGGTATTGCAAGCCAGAACCGGACAATATTTGGGAGAAAGTAGTGGATAGTGCTTTTGGGTCATATACACCATGTGCAATCAATACTCTTGTTATTTCAACTTCGAATTTGGTTCTAATGGGATTGTGTTTATATAGAATATGCCTTATTACTTTCAATGCCAAAGCTCAGAGGTTTTGTTTGAAATCGAATTACTATAATTATATTCTTGGAATGTTGGCTGGTTACTGCACTTTTCAGCCTTTGTTGAGATTGTTTACAGGAAATTCAGCTTTCAACCTGAATGGCGAAACTGATTTTGCTCCTTTTGAGATAACATCTCTGATCATCGAATCTATTACTTGGTTTTCAATGATGATTCTAATCCTCTTGGAAACCAAGGTTTATATTAGGCAATTTAGGTGGTTAGTAAGGTTTGGAGTTATTTATGTTTTGGTGGGAGATATCGTAATGCTTGAGCTTCTTCGCTCGGTGAAAGATTATTCCAGCAGATCTGCGCTATTTCTATATATTAGCACTGTTATCTGCCAGGTGCTGTTTGGTACTTTACTTCTAGTTTACATTCCTAATTTGGTTCCATATTCTGGTCATAATACAACAACGCAATCTGAGCTGCCTGACAATGGTGAATATGAACCACTTTGTGGAGATGATCAAGTTTGCCCCGAGATGCGCGCCAGTTTCTTATCTAGATTAAGTTTTGGATGGATAACTCCGTTGATGAAACAAGGGTATAGAAAACCAATCACTGAAAAGGATGTTTGGAAGCTAGACAAATGGGATGAAACACAGACATTAAATGAAAAATTCCAAAGGTGTTGGATGTCAGAATTTCAAAGCTCTAACCCTTGGCTTTTAAGAGCGTTAAACAGTAGTCTAGGGAAAAGGTTTTGGTTTGGAGGCATCTTTAAGATAGGTTACGATCTTTCTCAATTTATCGGGCCTATTTTGCTGAACCATCTCTTAGATTCAATGCAAAATGGAGATCCGTCTTGGATCGGTTACATCTACGCCTTCTCCATATTTGTGGGAGTGTCAGTTGGTGTTCTATGCGAGGCACAGTATTTCCAGAATGTTATGCGTGTAGGTTTTCGCCTTAGATCAACATTGGTGGCTGCTATATTCAGAAAATCGTTGAGGCTAACTCATGAAAGTAGAAACAAGTTTTCGTCGGGAAGGCTTATGAATATGATAACAACAGATGCGAATGCATTACAGCAAATATGTCAGCAACTTCATGGACTATGGTCAGCGCCATTTCGCATTATCATAGCGATGGTTCTTCTATACCAGCAACTAGGTGTTGCTTCAATTGTTGGATCAGTAATGCTAGTTCTCATTATTCCACTACAGACATTTGTGATTAGCAAAATGAGGAAACTGACAAAGGAAGGACTGCAACAGACAGACAGAAGGGTTGGTCTGATGAATGAAATTCTTTCTGCCATGGATACAGTAAAATGTTATGCATGGGAAACAAGCTTTCAATCTAGAATTCAAAGCATTCGACATGAAGAACTATCATGGTTCCGTAAAGCTCAGCTTCTATACGCTTTAAACAGTTTTATACTGAACAGCATCCCGGTTCTTGTGACAGTGACTTCCTTTGGAATGTTTATTTTACTTGGTGGAGAATTAACAGCTGCAAGGGCATTCACTTCACTCTCACTGTTTGCAGTTTTGCGATTTCCTTTAAATATGCTTCCAAATTTACTTAGTCAGGTAGCAAATGCAAATGTCTCGTTGCAACGTTTGGAGGAACTGTTTTCGGCCGAGGAACGAGATTTACAACAAAATCCACCAATTGTTGCAGGACTTCCAGCTATATCAATAAAGAATGGGCACTTTTCATGGGATCCAAAGGCAGACAAGGCAACATTATCAAATATCGATGTTGAAATACCAGTTGGCAGCTTAGTTGCAATCATTGGAGGAACCGGAGAAGGAAAAACATCACTTATTTCAGCAACGCTTGGAGAGATACCTCTGATATCTGATGGAAATGCTACAATCAGAGGCACTGTTGCTTATGTTCCTCAGATTTCATGGATTTACAATGCTACAGTTCGTGAAAATATACTATTTGGATCAAAATTTGATCATGCACGATATTGGAAGGCCATTGATGTTACTTCTTTGGAGCACGATCTCAACTTTTTACCTGGACGCGATTTTACTGAGATTGGAGAAAGAGGAGTCAATATTAGTGGTGGACAAAAGCAAAGAGTTTCTTTAGCTAGAGCTGTATACTCAAATTCTGATGTATATATATTTGATGATCCTTTAAGTGCTCTTGATGCTCATATTGCTCAAGAGGTTTTCAGGAACTGTATAAAGGAAGGGCTGCAAGAAAAAACCAGGGTTCTTGTCACCAACCAGCTTCATTTTCTCCCTCAGGTCGATAAAATTATCCTTGTCAATGAAGGAATGATTAAGGAACAAGGAACGTTCGAGGAGTTGTCGAAATGCGGGCCTCTATTTCAGAAGCTAATGGAAAACGCAGGAAAAATGGAACAAGAAGTAGATAGTAACAAAGATAGAGATAGTGATGACAAGAGTGATGCTTTACCTTTGAGTAATGAACCACTTGTAGAGTTACCAAATGATACAAGCTATGAGAAGAAGGGAAAATTGCGAAAATCGGTACTTGTAAGGAAAGAAGAGCGGGAAACAGGCGTGGTTAGCTGGAAAGTTTTAACGCGGTACACATCAGCTTTGGGAGGATTGTGGGTAGTTGCTATACTTTTTGCATGCTATACATTAACAGAAGCTCTCCGAATCTCGAGTAGCACATGGTTAAGTGTGTGGACATCTCAAGATTCCACTGCTGCTTCTCAAGCAGGATATTTTCTTTTCATCTATGCACTTTTTTCATTCGGACAGGTATCGGTAGCACTTGCAAACTCATATTGGTTGATCATTTCAAGTCTTCGTGCTGCGAAAAGACTGCACGATGCAATGCTAGATAAAATTCTAAGTGCTCCAATGCTATTCTTCCAGACGAATCCTGTCGGCCGCATAATTAATAGATTTGCAAAAGACACGGGAGACATAGATACCAATGTTTTTAATTTGGTGAATAATTTTCTGGGGCAAGTTTGGCAACTACTTTCAACATTTGTTCTAATAGGCACTGTGAGCACCATATCTCTGTGGGCCATATTGCCACTTTTGATATTTTTCTATGTTGCTTATATATACTACCAGAGCACAGCTAGAGAAGTGAAGCGCATGGATTCCATTACAAGATCCCCTGTTTATGCACATTTTGGAGAATCATTGAATGGTTTGTCGAGCATTCGTGCTTACAAAGCGTACGACAGGATGTCAATCAACAATGGAAAATTTGTGGATAACAATATCAGATTTACTCTTGTGAATATTAGTTCAAACCGTTGGTTGACGATAAGGCTAGAAAGCTTAGGAGGCCTCATGATTTGGTTGATAGCTACATTCGCTGTGTTACAAAATGCAAAATCGGAAAACCCTGCATTAATAGCATCTACAATGGGTCTACTTCTCAGTTATACATTAAACATAACAAATCTCTTGAGTGGCGTACTTAGACAAGCAAGTAGAGCTGAAAACAGTTTAAATTCGGTCGAGCGCGTTGACACGTATATAAATTTGGAAACTGAGGGTCAAAGTATAATTGAGACGAACCGTCCACCACCAGGATGGCCAACAAAAGGATCAATAGAGTTTGAGAATGTTGTTTTAAGTTATAGGCCAGAACTTCCTCCGGTTCTGCATGGATTATCGTTTGTAGTTCCTTCAACCGAGAAGATAGGTGTAGTTGGAAGAACTGGTGCCGGAAAGTCTAGCATGCTTAATGCGTTATTCCGGATTGTGGAACTTCAAAGTGGAAGAATCATTATTGATGGCCACGATATTTCTACGTTCGGACTAGCAGATCTGAGAAGAGTTCTTACTATCATACCACAGTCACCAGTTCTTTTCTCCGGAACCGTCCGTTTCAATCTTGATCCATTTAACGAACACAATGATGCTGACCTATGGGAAGCTTTGGAAAGGGCACACTTGAAGGATGTGATAAGAAGAAATTCATTTGGTCTAGATGCTCAGGTTTCTGAGGGAGGAGATAATTTCAGCGTTGGACAAAGGCAACTACTAAGTCTAGCTAGAGCATTACTAAGAAGATCAAAGGTTCTCGTCCTTGATGAAGCTACTGCTGCTGTAGACGTCCAAACAGACGCTCTTATACAGAAAACCATCAGACAAGAATTTCATTCCTGCACGATGCTCATCATTGCACATAGGCTGAATACAATTATCGATTGCAACCAGATTCTGCTGCTAGACGCTGGCAAGGTTCTTGAATACAGTTCACCCGAGGAACTCTTGCAAAACGAAGAAACTGCATTCTACAAAATGGTTCAAAGTACAGGACCTGCAAATGCTGAGTATTTATGTAGCTTAGTATTTGGAAAGACACAAAACAATTCAAATGAACGTAACGAGGATTTAGAAAACCACACGCGACAATTAGCATCTACAAATTGGGCTGCTGCTACTCAGTTTGCAATATCTTCTACACTTTCTTCTTTACATCAACACCTTCAAAGTCCAAATACTAAAGACGATAAGGATATCCTTAATAGAACAAAGGATGCAGTAGTTATACTTCAGGAAGTTTTAGAAGGAAAGCACGATGAAACTATAGAAGATACGTTGATTAAATATCATGTTCCTACAGATGGATGGTGGTCTACTCTCTATAAAGTTATTGAAGGTCTTGCTGTTTTGATCAAGTTGCCTCAGGATAATTTTCAACAATTAGAACCTGATTATGAAGGGAGATCCTTTGACTAA 4854 0.3925 MGFEPLIWYCKPEPDNIWEKVVDSAFGSYTPCAINTLVISTSNLVLMGLCLYRICLITFNAKAQRFCLKSNYYNYILGMLAGYCTFQPLLRLFTGNSAFNLNGETDFAPFEITSLIIESITWFSMMILILLETKVYIRQFRWLVRFGVIYVLVGDIVMLELLRSVKDYSSRSALFLYISTVICQVLFGTLLLVYIPNLVPYSGHNTTTQSELPDNGEYEPLCGDDQVCPEMRASFLSRLSFGWITPLMKQGYRKPITEKDVWKLDKWDETQTLNEKFQRCWMSEFQSSNPWLLRALNSSLGKRFWFGGIFKIGYDLSQFIGPILLNHLLDSMQNGDPSWIGYIYAFSIFVGVSVGVLCEAQYFQNVMRVGFRLRSTLVAAIFRKSLRLTHESRNKFSSGRLMNMITTDANALQQICQQLHGLWSAPFRIIIAMVLLYQQLGVASIVGSVMLVLIIPLQTFVISKMRKLTKEGLQQTDRRVGLMNEILSAMDTVKCYAWETSFQSRIQSIRHEELSWFRKAQLLYALNSFILNSIPVLVTVTSFGMFILLGGELTAARAFTSLSLFAVLRFPLNMLPNLLSQVANANVSLQRLEELFSAEERDLQQNPPIVAGLPAISIKNGHFSWDPKADKATLSNIDVEIPVGSLVAIIGGTGEGKTSLISATLGEIPLISDGNATIRGTVAYVPQISWIYNATVRENILFGSKFDHARYWKAIDVTSLEHDLNFLPGRDFTEIGERGVNISGGQKQRVSLARAVYSNSDVYIFDDPLSALDAHIAQEVFRNCIKEGLQEKTRVLVTNQLHFLPQVDKIILVNEGMIKEQGTFEELSKCGPLFQKLMENAGKMEQEVDSNKDRDSDDKSDALPLSNEPLVELPNDTSYEKKGKLRKSVLVRKEERETGVVSWKVLTRYTSALGGLWVVAILFACYTLTEALRISSSTWLSVWTSQDSTAASQAGYFLFIYALFSFGQVSVALANSYWLIISSLRAAKRLHDAMLDKILSAPMLFFQTNPVGRIINRFAKDTGDIDTNVFNLVNNFLGQVWQLLSTFVLIGTVSTISLWAILPLLIFFYVAYIYYQSTAREVKRMDSITRSPVYAHFGESLNGLSSIRAYKAYDRMSINNGKFVDNNIRFTLVNISSNRWLTIRLESLGGLMIWLIATFAVLQNAKSENPALIASTMGLLLSYTLNITNLLSGVLRQASRAENSLNSVERVDTYINLETEGQSIIETNRPPPGWPTKGSIEFENVVLSYRPELPPVLHGLSFVVPSTEKIGVVGRTGAGKSSMLNALFRIVELQSGRIIIDGHDISTFGLADLRRVLTIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDVIRRNSFGLDAQVSEGGDNFSVGQRQLLSLARALLRRSKVLVLDEATAAVDVQTDALIQKTIRQEFHSCTMLIIAHRLNTIIDCNQILLLDAGKVLEYSSPEELLQNEETAFYKMVQSTGPANAEYLCSLVFGKTQNNSNERNEDLENHTRQLASTNWAAATQFAISSTLSSLHQHLQSPNTKDDKDILNRTKDAVVILQEVLEGKHDETIEDTLIKYHVPTDGWWSTLYKVIEGLAVLIKLPQDNFQQLEPDYEGRSFD 1617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00183 1617 ProSitePatterns ABC transporters family signature. 742 756 IPR017871 GO:0005524|GO:0016887
Vifa2g00183 1617 Gene3D - 595 865 IPR027417 -
Vifa2g00183 1617 FunFam ABC transporter C family member 2 610 856 - -
Vifa2g00183 1617 Gene3D ABC transporter type 1, transmembrane domain 882 1221 IPR036640 GO:0005524|GO:0016020
Vifa2g00183 1617 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1230 1473 IPR027417 -
Vifa2g00183 1617 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1240 1474 IPR003439 GO:0005524
Vifa2g00183 1617 ProSitePatterns ABC transporters family signature. 1377 1391 IPR017871 GO:0005524|GO:0016887
Vifa2g00183 1617 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 230 1480 - -
Vifa2g00183 1617 CDD ABCC_MRP_domain2 1238 1458 - -
Vifa2g00183 1617 SUPERFAMILY ABC transporter transmembrane region 290 600 IPR036640 GO:0005524|GO:0016020
Vifa2g00183 1617 CDD ABCC_MRP_domain1 616 816 - -
Vifa2g00183 1617 Pfam ABC transporter 634 769 IPR003439 GO:0005524
Vifa2g00183 1617 CDD ABC_6TM_ABCC_D2 919 1215 IPR044726 GO:0140359
Vifa2g00183 1617 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 614 839 IPR027417 -
Vifa2g00183 1617 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 616 840 IPR003439 GO:0005524
Vifa2g00183 1617 FunFam ABC transporter C family member 2 883 1221 - -
Vifa2g00183 1617 SUPERFAMILY ABC transporter transmembrane region 917 1220 IPR036640 GO:0005524|GO:0016020
Vifa2g00183 1617 MobiDBLite consensus disorder prediction 844 862 - -
Vifa2g00183 1617 Coils Coil 575 602 - -
Vifa2g00183 1617 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 920 1203 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa2g00183 1617 SMART AAA_5 1266 1445 IPR003593 GO:0016887
Vifa2g00183 1617 SMART AAA_5 643 823 IPR003593 GO:0016887
Vifa2g00183 1617 FunFam ABC transporter C family member 2 280 601 - -
Vifa2g00183 1617 Pfam ABC transporter 1257 1405 IPR003439 GO:0005524
Vifa2g00183 1617 Pfam ABC transporter transmembrane region 920 1173 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa2g00183 1617 Pfam ABC transporter transmembrane region 305 572 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa2g00183 1617 CDD ABC_6TM_ABCC_D1 306 592 IPR044746 GO:0140359
Vifa2g00183 1617 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 305 584 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa2g00183 1617 Gene3D - 1223 1476 IPR027417 -
Vifa2g00183 1617 Coils Coil 834 854 - -
Vifa2g00183 1617 Gene3D ABC transporter type 1, transmembrane domain 293 594 IPR036640 GO:0005524|GO:0016020
Vifa2g00183 1617 MobiDBLite consensus disorder prediction 844 875 - -
Vifa2g00183 1617 FunFam Multidrug resistance-associated protein member 4 1224 1476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00183 Vifa-Chr2 23651596 23659868 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00183 561 832 Calmodulin-binding Proteins AT2G36910 26.190 1.20e-22 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00183 - K05665 vun:114175221 2746.07