Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00179 ATGAGTACAGAAACTCAAACAATAGTGGTGATCCAAGATGCATCAAGAGATGTTGGTTTAAAGGCAATAGAAAAGGTCCTCAAAAAGCTAGCAGTTAAAGCTGGAGATCAGCTTATAATTGTTGCCATTCTTAATTGGTTTAGCAGTCCTATGGGTTACATGGTCACTGTTGATTCTAGCTATTTTGTTTCAACAAACAAGAAAATTATTGAAGAAAACTTTAGCAAGAGAAAGAATGATTATCCGATGAATCGGTATATCAACAAGCTCTCTAAGTACTGTCAAATCAATCAGATTGAATTCCAACTAGAAGTGCATGCAGGACCAGCTCCTCAGATTATTTCTGAGGCTGCAGCTAAATTTCAACCTACAACTTTGATACTTGATAGGTATATCCACAGAAACATGAAGAATTTCATGGACCGGATCCCTTGTGGTATGTATAGGATAACAAGTGATAACTCCATTGAAAAGCTGAAAGATCCAAAATCAATAGCTTCCAAATTTTCTGAAAGGCAGGAAAATGTAAGCTATTCAGAAATGATACCGGGAAGTGAAGGCGACGGAGTTTCTCTTCAGATGTCCAAGTCTTCGTCTACCGATCTTTTCACGTCCGGAGTTTCAAGTAGCGATGCATCTGCTTCTGGTGTTGGAAGTTCAGAATATGTCCTTCAGAAATACCAAATGGGAGAGTTTTTTCCGGAACAAGAAAAACAAGAGAGACGATCATTATTTCATATTTGTGAAAATCAAGAATCGAACCGAACAGAAGTAAATCAAAAGGGGATAGAAATAGAGAATGCAGCATATAATATGGAGGAGGAGTTTACAAATCCAGCTTGTTCGGTGTGCAACAATAAAAGACTGAACATTGGATCGAAAAGAGACTTCAGTTACTTGGAGCTCTTTGCTGCTACAAAGGGATTTTCTGCTAAGAACTTTCTGTCGGAAGGTGGGTTTGGATCGGTCTACAAAGGACAGCTAAATGGAATGACGATTGCTGTTAAGCAACATAAAAGTGCAAGCTTCCAAGGAGAGAAGGAGTTTAGGTCTGAAGTGAATGTACTTAGAAGAGCAAGACATGAAAATGTGGTCATGCTTTTAGGTTCATGTTCAGAAGGGAAGAATAGGCTTCTTGTTTATGAATATGTATGCAATGGCTCACTTGATCAACATCTCTCCGAACACTCGAGATCACCTCTTACTTGGGAAGATAGGATCAAAGTAGCTATTGGAGCTGCCAGAGGCTTACTATACTTGCACGAAAATAACATCATACACAGAGATGTCAGACCAAACAATATCCTTGTAACACATGATCATCAACCATTGATAGGAGATTTTGGACTAGCAAGAACTCACAACAAAGATTTGACACACTCAACTGAAGTTGTTGGTACCTGGGGGTATTTGGCCCCAGAATATGCAGAATATGGCAAAGTGTCTAGTAGAACAGATGTATATTCTTTTGGAGTGGTTCTACTACAGCTTATCACTGGAATGAGAACTACAGACAAAAGACTTGGAGGAAGAAGTCTAGTTGGATGGGCAAGGCCACTTTTAAGAGAAAGAAATTATCCAGATCTAATTGATGAAAGGATCATTGATAGCCATGATTACCATCAATTATTTTGGATGATACGACTAGCAGAGAAATGTTTAAGCAAGGACCCTAAGAAAAGACTAAGTATGGTTGCGATTGTTAATGCTTTGAGTGACATTTCGGAAGGGAAAACATGTGACATTGGAACGGGAGATTACTCGCCTGCAAGGTCAGATTCATCTTATAGTGAATCAGAATTTGATGAAAACGAAGATGTTATACACGGAGGGTTTGAGGAGGAAAGTGAGTTACTAAGCACCATTTCAGAATCCATAGAAGGAACTGATAACATTAGTCAGATGAGACATATGAGTGTGAGGCAGCCGCCATCTCCTCCAATAATTAAAAGCATGTGTTCGAGCGGCTCAAACTCATTTCAGTTTTCTGATGAATCAAATAGTGATTATGAAGCACATTGTGAAATGCCAACTTACAGAATTGGCTTACTCAACAACTCTTAG 2064 0.3886 MSTETQTIVVIQDASRDVGLKAIEKVLKKLAVKAGDQLIIVAILNWFSSPMGYMVTVDSSYFVSTNKKIIEENFSKRKNDYPMNRYINKLSKYCQINQIEFQLEVHAGPAPQIISEAAAKFQPTTLILDRYIHRNMKNFMDRIPCGMYRITSDNSIEKLKDPKSIASKFSERQENVSYSEMIPGSEGDGVSLQMSKSSSTDLFTSGVSSSDASASGVGSSEYVLQKYQMGEFFPEQEKQERRSLFHICENQESNRTEVNQKGIEIENAAYNMEEEFTNPACSVCNNKRLNIGSKRDFSYLELFAATKGFSAKNFLSEGGFGSVYKGQLNGMTIAVKQHKSASFQGEKEFRSEVNVLRRARHENVVMLLGSCSEGKNRLLVYEYVCNGSLDQHLSEHSRSPLTWEDRIKVAIGAARGLLYLHENNIIHRDVRPNNILVTHDHQPLIGDFGLARTHNKDLTHSTEVVGTWGYLAPEYAEYGKVSSRTDVYSFGVVLLQLITGMRTTDKRLGGRSLVGWARPLLRERNYPDLIDERIIDSHDYHQLFWMIRLAEKCLSKDPKKRLSMVAIVNALSDISEGKTCDIGTGDYSPARSDSSYSESEFDENEDVIHGGFEEESELLSTISESIEGTDNISQMRHMSVRQPPSPPIIKSMCSSGSNSFQFSDESNSDYEAHCEMPTYRIGLLNNS 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00179 687 SMART tyrkin_6 309 571 IPR020635 GO:0004713|GO:0006468
Vifa2g00179 687 SUPERFAMILY Protein kinase-like (PK-like) 292 571 IPR011009 -
Vifa2g00179 687 Gene3D Phosphorylase Kinase; domain 1 281 383 - -
Vifa2g00179 687 ProSiteProfiles Protein kinase domain profile. 309 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00179 687 Gene3D Transferase(Phosphotransferase) domain 1 384 585 - -
Vifa2g00179 687 ProSitePatterns Tyrosine protein kinases specific active-site signature. 425 437 IPR008266 GO:0004672|GO:0006468
Vifa2g00179 687 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X1 384 586 - -
Vifa2g00179 687 Pfam Protein tyrosine and serine/threonine kinase 312 571 IPR001245 GO:0004672|GO:0006468
Vifa2g00179 687 FunFam Proline-rich receptor-like protein kinase PERK8 271 383 - -
Vifa2g00179 687 PANTHER OS01G0253100 PROTEIN 198 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00179 Vifa-Chr2 23594361 23598437 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00179 297 586 Trihelix Transcription Factor Family AT1G70460 47.176 1.77e-79 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vifa2g00179 PK_Tyr_Ser-Thr 3.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00179 - - gmx:100794450 860.136