Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00178 ATGAGTACAGAAACTCAAACAATAGTGGTGATCCAAGATGCATCAAGAGATGTTGGTTTAAAGGCAATAGAAAAGGTCCTCAAAAAGCTAGCAGTTAAAGCTGGAGATCAGCTTATAATTGTTGCCATTCTTAATTGGTTTAGCAGTCCTAGTATGTTTTCTTTCTTTGGAAGAAAGAGTTTGGGTTACATGGTCACTGTTGATTCTAGCTATTTTGTTTCAACAAACAAGAAAATTATTGAAGAAAACTTTAGCAAGAGAAAGAATGATTATCCGATGAATCGGTATATCAACAAGCTCTCTAAGTACTGTCAAATCAATCAGATTGAATTCCAACTAGAAGTGCATGCAGGACCAGCTCCTCAGATTATTTCTGAGGCTGCAGCTAAATTTCAACCTACAACTTTGATACTTGATAGGTATATCCACAGAAACATGAAGAATTTCATGGACCGGATCCCTTGTGGTATGTATAGGATAACAAGTGATAACTCCATTGAAAAGCTGAAAGATCCAAAATCAATAGCTTCCAAATTTTCTGAAAGGCAGGAAAATGTAAGCTATTCAGAAATGATACCGGGAAGTGAAGGCGACGGAGTTTCTCTTCAGATGTCCAAGTCTTCGTCTACCGATCTTTTCACGTCCGGAGTTTCAAGTAGCGATGCATCTGCTTCTGGTGTTGGAAGTTCAGAATATGTCCTTCAGAAATACCAAATGGGAGAGTTTTTTCCGGAACAAGAAAAACAAGAGAGACGATCATTATTTCATATTTGTGAAAATCAAGAATCGAACCGAACAGAAGTAAATCAAAAGGGGATAGAAATAGAGAATGCAGCATATAATATGGAGGAGGAGTTTACAAATCCAGCTTGTTCGGTGTGCAACAATAAAAGACTGAACATTGGATCGAAAAGAGACTTCAGTTACTTGGAGCTCTTTGCTGCTACAAAGGGATTTTCTGCTAAGAACTTTCTGTCGGAAGGTGGGTTTGGATCGGTCTACAAAGGACAGCTAAATGGAATGACGATTGCTGTTAAGCAACATAAAAGTGCAAGCTTCCAAGGAGAGAAGGAGTTTAGGTCTGAAGTGAATGTACTTAGAAGAGCAAGACATGAAAATGTGGTCATGCTTTTAGGTTCATGTTCAGAAGGGAAGAATAGGCTTCTTGTTTATGAATATGTATGCAATGGCTCACTTGATCAACATCTCTCCGAACACTCGAGATCACCTCTTACTTGGGAAGATAGGATCAAAGTAGCTATTGGAGCTGCCAGAGGCTTACTATACTTGCACGAAAATAACATCATACACAGAGATGTCAGACCAAACAATATCCTTGTAACACATGATCATCAACCATTGATAGGAGATTTTGGACTAGCAAGAACTCACAACAAAGATTTGACACACTCAACTGAAGTTGTTGGTACCTGGGGGTATTTGGCCCCAGAATATGCAGAATATGGCAAAGTGTCTAGTAGAACAGATGTATATTCTTTTGGAGTGGTTCTACTACAGCTTATCACTGGAATGAGAACTACAGACAAAAGACTTGGAGGAAGAAGTCTAGTTGGATGGGCAAGGCCACTTTTAAGAGAAAGAAATTATCCAGATCTAATTGATGAAAGGATCATTGATAGCCATGATTACCATCAATTATTTTGGATGATACGACTAGCAGAGAAATGTTTAAGCAAGGACCCTAAGAAAAGACTAAGTATGGTTGCGATTGTTAATGCTTTGAGTGACATTTCGGAAGGGAAAACATGTGACATTGGAACGGGAGATTACTCGCCTGCAAGGTCAGATTCATCTTATAGTGAATCAGAATTTGATGAAAACGAAGATGTTATACACGGAGGGTTTGAGGAGGAAAGTGAGTTACTAAGCACCATTTCAGAATCCATAGAAGGAACTGATAACATTAGTCAGATGAGACATATGAGTGTGAGGCAGCCGCCATCTCCTCCAATAATTAAAAGCATGTGTTCGAGCGGCTCAAACTCATTTCAGTTTTCTGATGAATCAAATAGTGATTATGAAGCACATTGTGAAATGCCAACTTACAGAATTGGCTTACTCAACAACTCTTAG 2094 0.3873 MSTETQTIVVIQDASRDVGLKAIEKVLKKLAVKAGDQLIIVAILNWFSSPSMFSFFGRKSLGYMVTVDSSYFVSTNKKIIEENFSKRKNDYPMNRYINKLSKYCQINQIEFQLEVHAGPAPQIISEAAAKFQPTTLILDRYIHRNMKNFMDRIPCGMYRITSDNSIEKLKDPKSIASKFSERQENVSYSEMIPGSEGDGVSLQMSKSSSTDLFTSGVSSSDASASGVGSSEYVLQKYQMGEFFPEQEKQERRSLFHICENQESNRTEVNQKGIEIENAAYNMEEEFTNPACSVCNNKRLNIGSKRDFSYLELFAATKGFSAKNFLSEGGFGSVYKGQLNGMTIAVKQHKSASFQGEKEFRSEVNVLRRARHENVVMLLGSCSEGKNRLLVYEYVCNGSLDQHLSEHSRSPLTWEDRIKVAIGAARGLLYLHENNIIHRDVRPNNILVTHDHQPLIGDFGLARTHNKDLTHSTEVVGTWGYLAPEYAEYGKVSSRTDVYSFGVVLLQLITGMRTTDKRLGGRSLVGWARPLLRERNYPDLIDERIIDSHDYHQLFWMIRLAEKCLSKDPKKRLSMVAIVNALSDISEGKTCDIGTGDYSPARSDSSYSESEFDENEDVIHGGFEEESELLSTISESIEGTDNISQMRHMSVRQPPSPPIIKSMCSSGSNSFQFSDESNSDYEAHCEMPTYRIGLLNNS 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00178 697 Pfam Protein tyrosine and serine/threonine kinase 322 581 IPR001245 GO:0004672|GO:0006468
Vifa2g00178 697 SUPERFAMILY Protein kinase-like (PK-like) 302 581 IPR011009 -
Vifa2g00178 697 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X1 394 596 - -
Vifa2g00178 697 ProSiteProfiles Protein kinase domain profile. 319 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00178 697 SMART tyrkin_6 319 581 IPR020635 GO:0004713|GO:0006468
Vifa2g00178 697 Gene3D Transferase(Phosphotransferase) domain 1 394 595 - -
Vifa2g00178 697 FunFam Proline-rich receptor-like protein kinase PERK8 281 393 - -
Vifa2g00178 697 PANTHER OS01G0253100 PROTEIN 208 585 - -
Vifa2g00178 697 ProSitePatterns Tyrosine protein kinases specific active-site signature. 435 447 IPR008266 GO:0004672|GO:0006468
Vifa2g00178 697 Gene3D Phosphorylase Kinase; domain 1 291 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00178 Vifa-Chr2 23594361 23598437 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00178 307 596 Trihelix Transcription Factor Family AT1G70460 47.176 1.91e-79 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vifa2g00178 PK_Tyr_Ser-Thr 3.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00178 - - gsj:114417376 868.226