Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00177 ATGTCTCATTCTCATAATCAATTAGTTGAACAATCTATTTGCTCAATGTGCCATAACAAGAGACCAAAGCTTGATTGGACAGTAAGAGACTTCACATATGCTGAGTTGCATGCAGCCACACAAGGTTTTTCCGTAAAGAATTTTCTGTCAGAAGGTGGATTTGGTTCTGTCTACAAAGGAGAGATTCTTGGACAGAAGATTGCTGTTAAGCAATGTATTCATGCGAATCACAAACAAGAGAAGGAGTTTAAGTCCGAAGTCGATGCACTAACAAAAGCAAGACATGAGAATGTTGTCGTGTTTCTTGGATTTTGTTCCGAAGGAAACAATAGGTTTCTTGTTTACGAATTCGTCTGCAATGGTTCACTCGATCAACATTTATCACAACATTCTCGGAAACCTCTTTGTTGGCAAGATAGGGTGAGAGTTGCTAATGGAGCTGCCAAAGGATTGTTATACCTGCATCAGAATAACATCATACATAGAGATATAAAGCCAAACAACATTCTTCTTACACATGATTGTGAAGTTTTGCTTGGTGATTTTGGTTTGGCTAAAATTGTAAGTGAAGAATTCTCATGTTCAATAGAATGTCCTGGAAATTTGGAATATTGGGCACCAGAATATGCAGCATCTGGTAAAGTATCAAATAAAACAGATGTGTATTCCTTTGGTGTGGTTCTAGTTGAGCTAATAACTGGAATGAAGACTACAGACAAAAGACTTGGTGGAAAGAATCTAGTGGGATGGGCTAGACCACTACTAAGACAAGGGAACTGTCAAAAACTTGTTGATGGAAGGATAATGGATTCACATGACTGTCATCAACTCTTCTGGTTGAGTCGTCTAGCTGGAAATTGTCTAAACAAAGATCCTCACAAACGATTAGATATGAACACAGTGGTCAAGGCCTTAACACATATAGAGGAAGGTTGCAGTGGCTGCATAGTGGGAAAAGACAGTATTGCTATGTCAAGCTATTCTAAATCAAAAGATGATATGCAGGACTCTTCAGAACCAGATGATGAAAGTGGAAATATTGGAACTAGTTCCATCACTGCAAATTGCAAGAATCTCAAATTATAA 1086 0.3812 MSHSHNQLVEQSICSMCHNKRPKLDWTVRDFTYAELHAATQGFSVKNFLSEGGFGSVYKGEILGQKIAVKQCIHANHKQEKEFKSEVDALTKARHENVVVFLGFCSEGNNRFLVYEFVCNGSLDQHLSQHSRKPLCWQDRVRVANGAAKGLLYLHQNNIIHRDIKPNNILLTHDCEVLLGDFGLAKIVSEEFSCSIECPGNLEYWAPEYAASGKVSNKTDVYSFGVVLVELITGMKTTDKRLGGKNLVGWARPLLRQGNCQKLVDGRIMDSHDCHQLFWLSRLAGNCLNKDPHKRLDMNTVVKALTHIEEGCSGCIVGKDSIAMSSYSKSKDDMQDSSEPDDESGNIGTSSITANCKNLKL 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00177 361 Gene3D Phosphorylase Kinase; domain 1 23 117 - -
Vifa2g00177 361 Pfam Protein tyrosine and serine/threonine kinase 45 305 IPR001245 GO:0004672|GO:0006468
Vifa2g00177 361 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X1 118 321 - -
Vifa2g00177 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Vifa2g00177 361 FunFam Proline-rich receptor-like protein kinase PERK8 4 117 - -
Vifa2g00177 361 PIRSF ILK 6 322 - -
Vifa2g00177 361 MobiDBLite consensus disorder prediction 327 352 - -
Vifa2g00177 361 SUPERFAMILY Protein kinase-like (PK-like) 26 306 IPR011009 -
Vifa2g00177 361 SMART serkin_6 43 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00177 361 ProSiteProfiles Protein kinase domain profile. 43 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00177 361 Gene3D Transferase(Phosphotransferase) domain 1 118 317 - -
Vifa2g00177 361 PANTHER OS01G0253100 PROTEIN 18 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00177 Vifa-Chr2 23582939 23584462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00177 2 312 Trihelix Transcription Factor Family AT5G38560 43.385 4.93e-76 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vifa2g00177 PK_Tyr_Ser-Thr 5.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00177 - - cam:101502867 632.869