Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00173 ATGTCAAGCCAGAGGAAACACAAACAGAAACACAGCGAAAGCGATGAAGACGACGACGTTTTTTTCTACCGCTACTGCGCTTCATCATCAACCGCCACCACCACCACCGCCACCATATCCAGTAATCAACCTCAATCAAAACCGAACAACAAAGGATCATCAATAGGAGCAACAGGAGAACCCTTAGCACCATCAAAATCAACGCTATACGTTTCAAATCTAGATTACTCCCTGACAAACTCCGATCTCCACACTCTCTTCTCTACTTTCGGCCGAATCGCGCGTGTGACCGTTCTCAAAGACCGTCACACGCGCCTCAGCCGCGGAGTCGCGTTTGTGCAATTCGTTTCTCGTCATGACGCTCAACGCGCCGTGACGGAGATGAATAAGAAGATTCTTAATGGACGGACTTTGACTGCTTCTATTGCAGCTGATAATGGACGTGCTCCGGAGTTTATTCGGAAGCGCGTCTACAACACTGAGACCGAGACTGCTTTGTGTTATGAGTGTGGGGGGCATGGTCATCTGTCGTATGAGTGTCCTAAGAATCAGTTGGGGCCGAGGCCGCGGCCTCAGCCTAAGAAGCCGCGGAGGGGATTTGGTGGGACAAGGGATAAGGATAGGGAGGAAGAGGGTGACGAGGAGGAGGAAGAGGGTGGTCAGATTGCCGCGGAGCAGTTTGAGGATAATTGGGCTTCTGTTGTGGATGATGAAGCGGGGGAGAGGTTGCTTGGGAGAAATGGAAATGATGGTGAGGGTTTTGACAACAAGAAGACGAAGAAGAAAGGGAAGAGAGCTGGATATTTTAGTGATGAGAGTGATCATGATGATGATTGA 837 0.4994 MSSQRKHKQKHSESDEDDDVFFYRYCASSSTATTTTATISSNQPQSKPNNKGSSIGATGEPLAPSKSTLYVSNLDYSLTNSDLHTLFSTFGRIARVTVLKDRHTRLSRGVAFVQFVSRHDAQRAVTEMNKKILNGRTLTASIAADNGRAPEFIRKRVYNTETETALCYECGGHGHLSYECPKNQLGPRPRPQPKKPRRGFGGTRDKDREEEGDEEEEEGGQIAAEQFEDNWASVVDDEAGERLLGRNGNDGEGFDNKKTKKKGKRAGYFSDESDHDDD 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00173 278 MobiDBLite consensus disorder prediction 181 278 - -
Vifa2g00173 278 SUPERFAMILY Retrovirus zinc finger-like domains 159 183 IPR036875 GO:0003676|GO:0008270
Vifa2g00173 278 MobiDBLite consensus disorder prediction 30 56 - -
Vifa2g00173 278 SMART rrm1_1 68 141 IPR000504 GO:0003723
Vifa2g00173 278 MobiDBLite consensus disorder prediction 209 223 - -
Vifa2g00173 278 FunFam U11/U12 small nuclear ribonucleoprotein 31 kDa protein 4 151 - -
Vifa2g00173 278 CDD RRM_ZCRB1 66 141 IPR034219 -
Vifa2g00173 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 138 IPR000504 GO:0003723
Vifa2g00173 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 145 IPR000504 GO:0003723
Vifa2g00173 278 Pfam Zinc knuckle 167 182 IPR001878 GO:0003676|GO:0008270
Vifa2g00173 278 ProSiteProfiles Zinc finger CCHC-type profile. 167 182 IPR001878 GO:0003676|GO:0008270
Vifa2g00173 278 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 11 277 IPR044598 GO:0000398|GO:0005689
Vifa2g00173 278 SUPERFAMILY RNA-binding domain, RBD 63 150 IPR035979 GO:0003676
Vifa2g00173 278 MobiDBLite consensus disorder prediction 251 272 - -
Vifa2g00173 278 SMART rrm2_1 68 141 IPR003954 GO:0003676
Vifa2g00173 278 MobiDBLite consensus disorder prediction 30 62 - -
Vifa2g00173 278 SMART c2hcfinal6 166 182 IPR001878 GO:0003676|GO:0008270
Vifa2g00173 278 Gene3D - 34 225 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00173 Vifa-Chr2 22659687 22660523 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00173 66 129 Eukaryotic Initiation Factors Gene Family AT3G11400 45.312 8.82e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00173 K13154 - psat:127137495 466.077