Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00171 ATGGAAAAAGGGTTAGGTCAAAACTCAGTTCCTCCTCCAGGTTCAATTGACAAGTCTCAGATTCTAGATATTAAGCCTATAAGATGTTTGATACCTGTTTTTTCGAAGAATCCTCAAGCTCCGTCTTCAGGACAGTATCCGTCCGGGTTTTCTCCGTTTTTCCCATTTGGTGGACCTCATGACAGTTCTACCACTGGGGTGAAACCTAGAGGTAGAGCAATGCCGACTCCGATTTGGTCATTTAGGAGCCCTGTAGGAGAGGATGAGGATCTCAATGGAAATGATGGTTATAGTCACAAAAGAGATGCACAGTCGAATCCGAGCCGGGTCAAGTTACAGAAGATCAAACTAAATCATAATTTCCAAGTTGATATGAGTGGATTAGTTGGTATAGGCCCGGCACAAAAATACGATGGGAACCAAGAAGTTGTTAATATTGTGCTCATGTCGTTTGATTCACTAAGAAGAAGGCTATGTCAACTTGTTGATGCCAATGAATTGAACATGGGTATGTTCAAGCGTACTGATTTGAAAGCTGGGAATATTTGTTTGTCCAGAGGAATTCGAACAAATGCGACAAAGAGAGTTGGATCGGTACCTGGAGTTGAGATCGGGGACATTTTCTTTTTCCGAATGGAAATGTGTGTTGTTGGTTTGCATTCCCAATCTATGGGGGGAATTGATGCCATCAAGGGTGACCATGAGGATGAGACTTTGGCTGTTAGCATTGTTTCGTCGGGAGAATACGACAATGAAGATGAGGATGGTGATGTTTTAATTTACACCGGTCAGGGTGGGAATTTTAATAAGAAAGAGAAGCATGTGTCTGATCAGAAGCTTCATAGGGGTAATCTTGCTTTGGATAGAAGTTCAAGACAACATAATGAAGTAAGAGTCATCCGGGGAATCAAAGATACTACGAGTTTGGGCTCAAAAATCTATATCTATGATGGTCTGTATAAAATTCAAGATTCATGGGCTGAAAAAGATAAAGAAGGCGGTGGCAACTTGTTTAAGTATAAGTTGATAAAAGTGCCTGGACAACATAGTGCCTTTTCTGTTTGGAAATTGATTCAGAAGTGGAAATCCGGCTTTCTTGCGAGGTCTGGACTTATTCTCCCGGACCTATCTTCGGGAGCTGAAAGTATTCCTGTTTCACTTGTCAATGAAGTTGATAACGTGAAGTCACCTGCCTTTTTCACGTATTTCCAGTCGCTTAGACATCCAAAATCATTCAGTTTAACGCAGCCTTCACATGGTTGCAGCTGTAATGCTAAAAAGGCATGTGTCCCAGGTGATTTGGACTGCTCTTGTATTCAGAGAAACAAAGGTGATTTTCCATATATTATCCACGGCGTTCTGGTGAACCGGAAGCCATTGGTTCATGAATGTGGCCCTACATGTAAATGTTTTCCTAACTGCAAAAACCGAGTATCTCAATCTGGTTTAAAGCACCAAATGGAAGTGTTCAAAACGAAGGATAAAGGCTGGGGTCTTCGATCATGGGATCCTATACGTGCTGGCGCTTTTATCTGCGAGTATGCAGGAGAAGTTATTGATAAAGCTAGGTTGAGTCAGCTTATAAAAGAAGGAGATACTGATGAGTATGTTTTCGATACAACCCGTGTTTATGAATCTTTCAAGTGGAATTATGAGCCTAAGTTACTCGGAGAAGTGAGAACAAACAAGTCTAGTGAGGATTATGCTATGCCACATCCTCTTATTATAAATGCTAAGAACGTTGGAAATGTGGCGAGATTCATGAATCATAGTTGCTCGCCAAATGTTTTCTGGCAGCCTGTCTTATACGAAGAGAACAACCAGTCCTTTCTCCATGTTGCATTTTTTGCATTGAGACATATTCCTCCAATGCAAGAGTTAACATATGACTATGGAACTGATCGATCTGATAACGCCGAGGGTAGCAGTGCACGCAAAGGTAGAAAGAAATGCTTTTGTGGATCAGTGAAATGCCGCGGTTCTTTTACTTGA 1992 0.4147 MEKGLGQNSVPPPGSIDKSQILDIKPIRCLIPVFSKNPQAPSSGQYPSGFSPFFPFGGPHDSSTTGVKPRGRAMPTPIWSFRSPVGEDEDLNGNDGYSHKRDAQSNPSRVKLQKIKLNHNFQVDMSGLVGIGPAQKYDGNQEVVNIVLMSFDSLRRRLCQLVDANELNMGMFKRTDLKAGNICLSRGIRTNATKRVGSVPGVEIGDIFFFRMEMCVVGLHSQSMGGIDAIKGDHEDETLAVSIVSSGEYDNEDEDGDVLIYTGQGGNFNKKEKHVSDQKLHRGNLALDRSSRQHNEVRVIRGIKDTTSLGSKIYIYDGLYKIQDSWAEKDKEGGGNLFKYKLIKVPGQHSAFSVWKLIQKWKSGFLARSGLILPDLSSGAESIPVSLVNEVDNVKSPAFFTYFQSLRHPKSFSLTQPSHGCSCNAKKACVPGDLDCSCIQRNKGDFPYIIHGVLVNRKPLVHECGPTCKCFPNCKNRVSQSGLKHQMEVFKTKDKGWGLRSWDPIRAGAFICEYAGEVIDKARLSQLIKEGDTDEYVFDTTRVYESFKWNYEPKLLGEVRTNKSSEDYAMPHPLIINAKNVGNVARFMNHSCSPNVFWQPVLYEENNQSFLHVAFFALRHIPPMQELTYDYGTDRSDNAEGSSARKGRKKCFCGSVKCRGSFT 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00171 663 ProSiteProfiles YDG domain profile. 197 344 IPR003105 -
Vifa2g00171 663 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 180 363 - -
Vifa2g00171 663 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 116 655 - -
Vifa2g00171 663 Pfam SAD/SRA domain 196 348 IPR003105 -
Vifa2g00171 663 ProSiteProfiles Post-SET domain profile. 647 663 IPR003616 -
Vifa2g00171 663 SMART set_7 485 638 IPR001214 GO:0005515
Vifa2g00171 663 ProSiteProfiles SET domain profile. 485 632 IPR001214 GO:0005515
Vifa2g00171 663 Pfam Pre-SET motif 377 477 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vifa2g00171 663 Gene3D - 180 362 IPR036987 -
Vifa2g00171 663 Gene3D SET domain 365 662 IPR046341 -
Vifa2g00171 663 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 663 IPR025794 GO:0016571
Vifa2g00171 663 SUPERFAMILY PUA domain-like 179 366 IPR015947 -
Vifa2g00171 663 SMART G9a_1 192 348 IPR003105 -
Vifa2g00171 663 MobiDBLite consensus disorder prediction 62 109 - -
Vifa2g00171 663 Pfam SET domain 496 632 IPR001214 GO:0005515
Vifa2g00171 663 ProSiteProfiles Pre-SET domain profile. 419 482 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vifa2g00171 663 SUPERFAMILY SET domain 382 660 IPR046341 -
Vifa2g00171 663 MobiDBLite consensus disorder prediction 88 107 - -
Vifa2g00171 663 SMART preset_2 373 469 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00171 Vifa-Chr2 22416675 22418666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00171 1 662 Su(var)3-9 homologs AT1G73100 51.159 0.0 663
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa2g00171 SAD_SRA 4.9e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00171 K24405 - gmx:100812173 943.34