Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00166 ATGGGGTCTCAAGTTATCGTTGATAACAATAACGAAAACCATTCGCAATTCCAGCCTTTGGTGAGGCAAAATTCGATGTACAATCTCACCCTTGATGAAGTTCAGAGTCAATTAGGCGACTTGGGAAAGCCGCTAAGCAGTATGAACCTAGACGAGCTTCTTCAAAATGTATGGACTGTCGAGGCAAACCAGTCCATTCAAATGGACAACGCGAACACACCTCAAACCGGACAAGTTGTTTTGCAAAATCAACCTAATCTCCCTTTAACCGCTGCGCTAAGCAAGAAAACCGTTGACGAGGTTTGGAGAGACATCCAACAAAGCAAAGATCATGAGGAGGTGATGTCTCAAGAGAGACAATCTACTTTGGGGGAGATGACATTAGAGGACTTTTTGGTGAAAGCAGGCGTTGTTTCGGTTGCACCTTCTAATAGAAAGAATATTAACAGTCCTAAAGTTGACGCTGTTGATTCAAGCCTAGTGGTACCGCAGTTTGTTCCGCATGGTCCATGGATGCAGCAGTATGCACAGGCACATTATCAGCATCCACAACAAAATGTGTTGCCAACTTATGTTACAAGCCAGATATTAGCACAGCCAATGCACATGGTGACAGGTTCTCCAATGGATGTTGTTCCATATGCAGATAGTCAGGTGGCATCATTGGCTTCGCCTGCGATGGGAAACTTATCAGATTCAAAGAAATCAGGTCGGAAGCGCGGCTTACCAGATGATGTAGCTGTGAGGACAGTCGAGAGGAGGCAGAAGAGGATGATCAAGAATCGGGAATCTGCTGCCCGTTCAAGAGCAAGGAAACAGGCCTACACAACTGAATTGGAGATCAAAGTCACGCGTCTCGAAGAGGAAAATGAAATGCTGAGAAAAGAAAAGGAACTTTGCAACATGTTAGCAAATGTTCCACCGCCCGAGCCAAAATGTGAGCTTCGTCGTGTATCTTCGGCGTCATTTTGA 972 0.4527 MGSQVIVDNNNENHSQFQPLVRQNSMYNLTLDEVQSQLGDLGKPLSSMNLDELLQNVWTVEANQSIQMDNANTPQTGQVVLQNQPNLPLTAALSKKTVDEVWRDIQQSKDHEEVMSQERQSTLGEMTLEDFLVKAGVVSVAPSNRKNINSPKVDAVDSSLVVPQFVPHGPWMQQYAQAHYQHPQQNVLPTYVTSQILAQPMHMVTGSPMDVVPYADSQVASLASPAMGNLSDSKKSGRKRGLPDDVAVRTVERRQKRMIKNRESAARSRARKQAYTTELEIKVTRLEEENEMLRKEKELCNMLANVPPPEPKCELRRVSSASF 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00166 323 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 251 303 - -
Vifa2g00166 323 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 256 271 IPR004827 GO:0003700|GO:0006355
Vifa2g00166 323 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 21 321 IPR043452 GO:0003700|GO:0045893
Vifa2g00166 323 SUPERFAMILY Leucine zipper domain 253 300 IPR046347 GO:0003700|GO:0006355
Vifa2g00166 323 Coils Coil 276 303 - -
Vifa2g00166 323 CDD bZIP_plant_BZIP46 253 299 - -
Vifa2g00166 323 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 251 296 IPR004827 GO:0003700|GO:0006355
Vifa2g00166 323 SMART brlzneu 249 305 IPR004827 GO:0003700|GO:0006355
Vifa2g00166 323 Pfam bZIP transcription factor 253 298 IPR004827 GO:0003700|GO:0006355
Vifa2g00166 323 Gene3D - 251 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00166 Vifa-Chr2 20384558 20385730 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00166 14 323 bZIP Transcription Factor Family AT3G56850 49.841 2.96e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa2g00166 bZIP_1 3.7e-14 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00166 K14432 - gmx:100784924 396.741