Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00141 ATGGATTCTAATAGGCCACTTTTGTTACAATCACCAAGAACACCAAATGATCAAGAATTTCCAACACTTGCAGTTTTTCCTGAATTACCAAAATCAAAATCAAGTTCAAGCAACACAGTTACATTCTCCGGTGTGGAATATGGTATACAAGTTGATAATAAGAACTCTTCAAACTCATCAACAACATCATCATCAAGTAAAAGTATTATGTCAATTCATTCAATGAGTTCTAACAAGCGGAACAATAGTGTAACAAACTCGGGGTCAAGAAAATCTGTGAGGTATGGTTCAAAAGGTGGTGGTGGAGGTGATTCTGATGGATTAAGCATGTCACAGAGAGAGTTAAGAGATGAAGATGCGAGATTGGTATACATCAATGATCCTGATAAAACGAATGAGAATTTCGAGTTTTTTGGAAATTCGATCCGAACTGCTAAATACTCAATTCTCACTTTCATTCCAAGGAACTTGTTTGAGCAGTTTCATAGAGTTGCTTACGTATATTTTCTCATCATTGCTATACTTAATCAGCTTCCTCAACTCGCGGTTTTCGGGCGATACGTTTCGATTCTGCCGTTGGCTTTCGTTCTGTTTGTGACTGGTGTGAAAGATGCTTTTGAGGATTGGAGGAGACATAATTCAGATAAAGTTGAGAACAACAGGTTAGCATCAGTTTTGGTTCATGATGGTAGCTTTGCAGACAAGAAATGGAAGGATATTAGGGTTGGTGAGATTGTGAAAATCAAAACAAATGAAACAATTCCTTGTGACATTGTTTTGTTGTCAACTAGTGATTCAACTGGTGTAGCATATGTGCAAACTATTAATCTCGACGGTGAGAGTAATTTGAAGACTCGGTACGCGAAAATGGAGACAGGTTTAAAGATTCAACCGAGGTTTACCGGTTTGATTAAGTGCGAGAAACCAAATAGGAACATATACGGGTTTATGGCGAATATGGAGATTGATGGTAAGAAGTTATCACTTGGATCAACCAACATTGTGCTTAGAGGATGTGAGCTCAAGAATACTAGTTGGGCGCTTGGTGTCGCGGTCTACTGCGGCCGCGATACCAAGGCTATGCTCAACAGTTCTGGAGCTCCCTCGAAGAGGAGTCGTCTAGAGACGCGTATGAATTACGAAATTATTATGCTGTCTTTCTTTCTTGTTGCATTGTGTACGATTACGTCGGTTTGTGCAGCGGTTTGGTTGAAACGCCATAAAGACGAGCTGAATCTGTTGCCTTATTATAGGAAACTTGATTTTTCCAAGGCGAAAGTTAAAGACTATAAGTACTATGGATGGGGATTGGAAATCTTTTTCACATTCCTTATGTCAGTTATAGTTTACCAAGTCATGATTCCCATTGCTTTGTATATTTCTATGGAGCTTGTTCGCGTTGGTCAGGCCTATTTCATGATCGAAGATGATCGATTGTTTGATAAAGCTACGAATTCGAGGTTTCAGTGCAGGGCTTTAAATATTAATGAAGATTTGGGACAGATTAAGTATGTTTTCTCAGATAAAACCGGTACACTTACCGAAAATAAGATGGAGTTTCAATGTGCTAGCATTTGGGGAGTTGATTACAGTTCCTCAAAAGCCAGCATGGAGGATGAACAAACCGAATACTCGGTGCAAGTTGATGGAAAGGTGTTGAAACCGAAGATGAAGGTGAAAGTTAATCCGGAGCTTTTGAAATTGGCGAGAAATGGATTTCGAAATGTGGAAGGAAAAAGGATTTACGAGTTCTTTCTAGCACTTGCAACCTGCAATACTATTGTGCCTCTTGTTGTTGACACACCTGATCCTGATGTCAAGCTGTTAGATTACCAAGGTGAATCGCCCGATGAACAAGCATTGGCGTATGCCGCGGCCGCCTATGGTTTTATGCTCATCGAACGAACCTCCGGCCATATCGTCATTGATATTCATGGAGAAAGACTAAAGTTCAATGTCTTGGGTTTACATGAATTTGACAGTGATAGAAAAAGAATGTCGGTTATATTAGGCTACCCCGACAATTCAGTTAAGCTTTTCGTCAAAGGAGCCGACACAACCATGTTTAGTATAATCGACAAATCATACAACATGGACTTGATAAAATCGACAGAAACTCATCTTCACTCGTATTCATCTCTCGGTTTACGAACACTTGTGATTGGAATGAGAGAACTCAACACTTCCGAGTTCGAACAATGGCATGCATCCTATGAAGCAGCGAGCACCGCAGTGTTTGGCAGGGCTGCAATGCTTAGAAAAATTTCAAACCATGTTGAAAACAATGTTTGCATATTAGGAGCTTCTGCTATCGAAGATAAACTACAACACGGCGTGCCTGAAGCAATCGAGTCTCTAAGGGCAGCAGGGATTAAAGTCTGGGTGTTAACTGGTGACAAGCAAGAAACTGCTGTATCGATCGGGTTCTCATCGAAACTCTTAACAAGAAGCATGACTCAAATTATTATTAGTAGTAATAATAAAGCTTCGTGTAGAAAAAGTCTCAAAGACGCTCTTGAAAGATCTAGAAAACTTGATGCAGTTTCAACGCAGATCGCTTTGATTATCGATGGTGGAAGCCTTGTTCACATTCTCGATACTGATCATGAAGAAGAGCTATTTCAACTTGCAAGTTTGTGTTCTGTTGTTCTTTGTTGTCGAGTTGCTCCACTGCAAAAAGCTGGTATTGTTTCCCTAGTGAAGAAGAGAACATCTGACATGACACTAGCTATCGGAGACGGTGCTAATGATGTGTCAATGATTCAAATGGCTGATGTTGGAGTTGGTATCAGTGGACAAGAGGGTAGGCAAGCTGTAATGTCATCGGATTTTGCAATGGGACAGTTTAGGTTCTTAGTTCCTCTCTTGTTGGTTCATGGTCACTGGAATTACCAAAGGCTTGGTTACATGATACTATACAATTTCTACAGAAATGCTGTCCTGGTTCTTGTCCTATTTTGGTATGTACTCTACACGGCTTTCACTTTAACAACCGCTATAAACGAATGGAGCTCCACATTGTATTCAATAGTCTACAGCGCACTACCGACTATCATCGTCGGAATTCTCGACAAAGATCTTGGTAGAAGCACTCTCCTAAGGTACCCTCAGCTTTATAGTGCCGGCCAAAGAAATGAAGCTTACAACAAGAAACTGTTTATGTTAACAATGGCTGATACATTGTGGCAAAGCATGGTTATATTTTGGCCTCCACTCTTTGCATATTGGAAAAGTACTATTGATGTAGCAAGTATAGGAGATCTTTGGACTTTGGCAGTGGTTATTATTGTCAATTTACATTTGGCAATGGATGTTGTGAGATGGTATTGGGTGACTCATGCTGTCATTTGGGGATCTATTGCTGCTACTTTCATTGCTGTCATGATCATTGATTCTATACCTAAACTTCCTGGTTTCTGGGCCTTCTTTCATGTTGCAAACACTGGATTATTCTGGGCATTGTTACTAGGAATTATCATAGCAGCATTGCTTCCACGTTTGGTTGTAAAGTTTATTTATCAATATTACTTTCCAAGTGATATTCAAATTTCTAGAGAAGCTGAAAAAATGAGACAATATCAAAGAGTTGCTGAAAATCAACAAATAGAAATGCTTCCTGTCTCATATCATCAACAAACAAGATAA 3645 0.397 MDSNRPLLLQSPRTPNDQEFPTLAVFPELPKSKSSSSNTVTFSGVEYGIQVDNKNSSNSSTTSSSSKSIMSIHSMSSNKRNNSVTNSGSRKSVRYGSKGGGGGDSDGLSMSQRELRDEDARLVYINDPDKTNENFEFFGNSIRTAKYSILTFIPRNLFEQFHRVAYVYFLIIAILNQLPQLAVFGRYVSILPLAFVLFVTGVKDAFEDWRRHNSDKVENNRLASVLVHDGSFADKKWKDIRVGEIVKIKTNETIPCDIVLLSTSDSTGVAYVQTINLDGESNLKTRYAKMETGLKIQPRFTGLIKCEKPNRNIYGFMANMEIDGKKLSLGSTNIVLRGCELKNTSWALGVAVYCGRDTKAMLNSSGAPSKRSRLETRMNYEIIMLSFFLVALCTITSVCAAVWLKRHKDELNLLPYYRKLDFSKAKVKDYKYYGWGLEIFFTFLMSVIVYQVMIPIALYISMELVRVGQAYFMIEDDRLFDKATNSRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIWGVDYSSSKASMEDEQTEYSVQVDGKVLKPKMKVKVNPELLKLARNGFRNVEGKRIYEFFLALATCNTIVPLVVDTPDPDVKLLDYQGESPDEQALAYAAAAYGFMLIERTSGHIVIDIHGERLKFNVLGLHEFDSDRKRMSVILGYPDNSVKLFVKGADTTMFSIIDKSYNMDLIKSTETHLHSYSSLGLRTLVIGMRELNTSEFEQWHASYEAASTAVFGRAAMLRKISNHVENNVCILGASAIEDKLQHGVPEAIESLRAAGIKVWVLTGDKQETAVSIGFSSKLLTRSMTQIIISSNNKASCRKSLKDALERSRKLDAVSTQIALIIDGGSLVHILDTDHEEELFQLASLCSVVLCCRVAPLQKAGIVSLVKKRTSDMTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMSSDFAMGQFRFLVPLLLVHGHWNYQRLGYMILYNFYRNAVLVLVLFWYVLYTAFTLTTAINEWSSTLYSIVYSALPTIIVGILDKDLGRSTLLRYPQLYSAGQRNEAYNKKLFMLTMADTLWQSMVIFWPPLFAYWKSTIDVASIGDLWTLAVVIIVNLHLAMDVVRWYWVTHAVIWGSIAATFIAVMIIDSIPKLPGFWAFFHVANTGLFWALLLGIIIAALLPRLVVKFIYQYYFPSDIQISREAEKMRQYQRVAENQQIEMLPVSYHQQTR 1214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00141 1214 CDD P-type_ATPase_APLT_Dnf-like 139 1069 - -
Vifa2g00141 1214 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 512 779 IPR023299 GO:0000166
Vifa2g00141 1214 SFLD p-type atpase 490 962 IPR044492 -
Vifa2g00141 1214 SUPERFAMILY Calcium ATPase, transmembrane domain M 139 1178 IPR023298 -
Vifa2g00141 1214 Pfam Phospholipid-translocating ATPase N-terminal 123 190 IPR032631 -
Vifa2g00141 1214 MobiDBLite consensus disorder prediction 1 39 - -
Vifa2g00141 1214 Pfam E1-E2 ATPase 224 464 - -
Vifa2g00141 1214 FunFam Phospholipid-transporting ATPase 610 743 - -
Vifa2g00141 1214 PRINTS Sodium/potassium-transporting ATPase signature 988 1008 - -
Vifa2g00141 1214 PRINTS Sodium/potassium-transporting ATPase signature 499 520 - -
Vifa2g00141 1214 Gene3D - 762 951 IPR023214 -
Vifa2g00141 1214 NCBIfam HAD-IC family P-type ATPase 438 532 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa2g00141 1214 NCBIfam HAD-IC family P-type ATPase 881 997 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa2g00141 1214 SUPERFAMILY HAD-like 501 957 IPR036412 -
Vifa2g00141 1214 MobiDBLite consensus disorder prediction 1 18 - -
Vifa2g00141 1214 FunFam Phospholipid-transporting ATPase 195 363 - -
Vifa2g00141 1214 Pfam Cation transport ATPase (P-type) 611 689 - -
Vifa2g00141 1214 Coils Coil 1183 1203 - -
Vifa2g00141 1214 MobiDBLite consensus disorder prediction 51 93 - -
Vifa2g00141 1214 Pfam Phospholipid-translocating P-type ATPase C-terminal 939 1179 IPR032630 -
Vifa2g00141 1214 Gene3D - 612 742 IPR023299 GO:0000166
Vifa2g00141 1214 ProSitePatterns E1-E2 ATPases phosphorylation site. 508 514 IPR018303 -
Vifa2g00141 1214 Gene3D - 202 363 - -
Vifa2g00141 1214 FunFam Phospholipid-transporting ATPase 765 951 - -
Vifa2g00141 1214 SFLD Haloacid Dehalogenase 490 962 - -
Vifa2g00141 1214 SUPERFAMILY Calcium ATPase, transduction domain A 226 360 IPR008250 -
Vifa2g00141 1214 PRINTS P-type cation-transporting ATPase superfamily signature 506 520 - -
Vifa2g00141 1214 PRINTS P-type cation-transporting ATPase superfamily signature 789 799 - -
Vifa2g00141 1214 PRINTS P-type cation-transporting ATPase superfamily signature 911 930 - -
Vifa2g00141 1214 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 105 1192 - -
Vifa2g00141 1214 MobiDBLite consensus disorder prediction 51 111 - -
Vifa2g00141 1214 NCBIfam phospholipid-translocating P-type ATPase 137 1186 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00141 Vifa-Chr2 16868258 16873807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00141 77 1204 Primary Pumps ATPases AT5G04930 69.197 0.0 1657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00141 K14802 - gmx:100813982 1837