Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00132 ATGGCTGCAGAGAAGAAGCTTTCTAATCCCATGCGGGAAATCAAAGTCCAGAAACTTGTTCTCAACATCTCTGTTGGTGAGAGTGGAGATCGTCTCACCAGAGCTGCTAAGGTTCTCGAACAACTTAGTGGTCAAACCCCAGTTTTCTCCAAAGCTAGGTACACTGTCCGTTCTTTTGGTATTAGAAGGAATGAAAAGATTGCATGTTACGTAACTGTTAGAGGCGATAAGGCAATGCAGCTTTTGGAGAGCGGGTTGAAAGTGAAAGAATACGAACTTTTGAGGAGAAATTTCAGTGATACCGGGTGTTTTGGCTTTGGTATTCAAGAACACATTGACTTGGGAATCAAGTATGATCCTTCTACTGGAATTTATGGAATGGATTTCTTTGTTGTGTTGGAGCGCCCTGGTTACCGTGTTGGACGTCGTCGCCGTTGCAAGGCACGTGTTGGAATCCAACACCGTGTTACAAAGGAGGATTCGATGAAATGGTTTCAAGTGAAATATGAAGGTGTGATCCTTAACAAGTCCCAGGCAATTTAA 543 0.4346 MAAEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRVTKEDSMKWFQVKYEGVILNKSQAI 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00132 180 Pfam Ribosomal protein L5 9 62 IPR031310 -
Vifa2g00132 180 Pfam ribosomal L5P family C-terminus 66 164 IPR031309 -
Vifa2g00132 180 PIRSF RPL5p_RPL5a_RPL11e_RPL5o 1 172 IPR002132 GO:0003735|GO:0005840|GO:0006412
Vifa2g00132 180 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 3 176 IPR002132 GO:0003735|GO:0005840|GO:0006412
Vifa2g00132 180 FunFam 60S ribosomal protein L11 2 174 - -
Vifa2g00132 180 ProSitePatterns Ribosomal protein L5 signature. 39 55 IPR020929 GO:0003735|GO:0005840|GO:0006412
Vifa2g00132 180 SUPERFAMILY RL5-like 8 173 IPR022803 -
Vifa2g00132 180 Gene3D - 2 177 IPR022803 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00132 Vifa-Chr2 16329870 16331969 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00132 1 180 Cytoplasmic Ribosomal Protein Gene Family AT2G42740 95.000 1.00e-128 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00132 K02868 - gmx:100810082 337.421