Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00124 ATGGCTCTGAAGTTTATAGCTATTTCGGCGGTTTCGACAGTGTTAAGTTTTGTAGGTCTTCAGTTTTGCACAGATTTTTCATTAGAAAAAGTTAAATCAGATGGACTAGTTGGCTGGAATTCGATTCACTTGGATAATGTCGACCAGGATGTTGAGTTACCTTTGGGTTTGTATACCACCATAGGGTTGTTTACGAATTGCATGATCAATGTATTTGTCCTTCTCAATCTTTGTCTCAAGGCTATGTTTTTCGCCGAGTTGTATCCTTCTGAATCTCGTAAATTGGTTGAACGCCTTGTTAATTATGTCATCTACAAGGGGACATTTCTTCCATTGATAGTGCCACCGACACTTTATCAGGCAGGTCTTTGGACAGCTTGGTTGGCCGTGCTTTGTTCTTTAAAGATGTTTCAAGCTCTGGCTAGAGATCGATTGGAGCGACTGAATGCATCACCATCCGCCACACCATGGACATATCTTCGTGTATATTCAGCATTGTTGTTCATTTTCTTAGTTGATGTTCTCTGGATAAGGCTTTGTCTTTCAATATATACAACACATGGGTCCTCTATGTTTCTGTTACTGTTCTTTGAGCCTTTAAGTATTGCTTTCGAAACCCTACAGGCCATTTTGGTACATGGATTTCAGTTGCTTGACATATGGATTCATCATTCGGCTTGCAGTAGTAGTGGTTTCCGAACACCTAAACTGCTTGACACATTAACTGCAGGTTCTTTATTGGAATGGAAGGGAGTTCTTATCCGGAACTTGGGATTTTTCCTTGACATGGCAACTTTTTTCATGGCACTTGGTCATTACTTGTATATATGGCGGCTTCATGGCATGGCTTTCCATCTTGTAGACGCAGTGCTATTTTTAAATATACGTGCGTTGCTTAGTGCGATAATAAACCGCATAAAAGGATTTATTAGGCTGAGGATAGCTCTAGGGTCACTTCATGCAGCTCTTCCTGATGCAACCACGGAGGAGCTAAGAGCATACGACGATGAATGTGCTATTTGTAGAGAACCAATGGCTAAGGCGAAAAAGCTAAACTGCAATCACCTCTTCCATCTTGCGTGTTTGAGATCTTGGTTGGATCAAGGCCTGACTGAGATATATACTTGTCCAACATGCCGAAAGCCGCTTTTTGCAGGCCGACCTGAAAATGAAACGAATTCCAGTACAGGGGTAATATCTAGTGACGAGCAACTTGCACGGCAAATAAGTGCAGGATTTGATCGTCAAAACTCTGCTAGACATAACATGCCTGCAGGATTGTTTCCAAATCAGACACCGAATAATGCCGAAGGCGCTCCTTGGAGGGGTGCAGGAATGGACTCAGGGTGGTTGCATTCTTGGCCAAATCCGGGTGTTGATGGAGCTGGTCCATCTACCGCTATCAGAACAGTAGGTCTCGGAAGAGTTCAAATGATGATGAGACATCTTGCATCTGTTGGAGAAACCTATGCTCAAACCACCTTCGATGATGCTTCTTGGAACCTTTGGCCTATTAATCCATCTCAGGCTTCTGCGAGTGCTCCAAGTGCGACGACCGTTCCTTCACCTGGTGTAAGATTGCCAGGAGGAAATGGCGGCTTACATATAAGGACCAATTCACGATCTGCAAATGATAATGTAGCAAATGTACTTGCTATGGCCGAGACAGTTCGGGAGGTTCTACCTCATATTCCAGATGACATGATATTCCAGGACTTACAGCGGACAAATTCTGTAACAGTTACTGTGAATAATCTTCTCCAAATGTGA 1770 0.4311 MALKFIAISAVSTVLSFVGLQFCTDFSLEKVKSDGLVGWNSIHLDNVDQDVELPLGLYTTIGLFTNCMINVFVLLNLCLKAMFFAELYPSESRKLVERLVNYVIYKGTFLPLIVPPTLYQAGLWTAWLAVLCSLKMFQALARDRLERLNASPSATPWTYLRVYSALLFIFLVDVLWIRLCLSIYTTHGSSMFLLLFFEPLSIAFETLQAILVHGFQLLDIWIHHSACSSSGFRTPKLLDTLTAGSLLEWKGVLIRNLGFFLDMATFFMALGHYLYIWRLHGMAFHLVDAVLFLNIRALLSAIINRIKGFIRLRIALGSLHAALPDATTEELRAYDDECAICREPMAKAKKLNCNHLFHLACLRSWLDQGLTEIYTCPTCRKPLFAGRPENETNSSTGVISSDEQLARQISAGFDRQNSARHNMPAGLFPNQTPNNAEGAPWRGAGMDSGWLHSWPNPGVDGAGPSTAIRTVGLGRVQMMMRHLASVGETYAQTTFDDASWNLWPINPSQASASAPSATTVPSPGVRLPGGNGGLHIRTNSRSANDNVANVLAMAETVREVLPHIPDDMIFQDLQRTNSVTVTVNNLLQM 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00124 589 SMART ring_2 338 379 IPR001841 -
Vifa2g00124 589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 388 IPR013083 -
Vifa2g00124 589 Pfam Ring finger domain 336 380 IPR001841 -
Vifa2g00124 589 FunFam E3 ubiquitin protein ligase RIN2 548 588 - -
Vifa2g00124 589 ProSiteProfiles Zinc finger RING-type profile. 338 380 IPR001841 -
Vifa2g00124 589 CDD CUE_RIN3_plant 550 587 IPR035667 -
Vifa2g00124 589 Gene3D - 548 588 - -
Vifa2g00124 589 SUPERFAMILY RING/U-box 326 386 - -
Vifa2g00124 589 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 11 589 - -
Vifa2g00124 589 FunFam E3 ubiquitin protein ligase RIN2 311 390 - -
Vifa2g00124 589 Pfam CUE domain 553 589 IPR003892 GO:0043130
Vifa2g00124 589 ProSiteProfiles CUE domain profile. 549 589 IPR003892 GO:0043130
Vifa2g00124 589 CDD RING-H2_AMFR 336 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00124 Vifa-Chr2 13423681 13427594 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00124 57 397 C3H Transcription Factor Family AT3G16090 28.338 2.78e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00124 K10636 - gmx:100820578 1032.71