Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00105 ATGGATAGGATTCAAGAGGGAGATGAAAATGAAGGAGTGCTTATCTTCAAGCTTATACATGTTAGGGCTGTTATCAAAGGAGTTCCAACACCAATGGGTGATGTGCTTCCTCTTTCGCAAGTTCGTAACGATGTAGCAATGGCTTTCAAAAGGGAAATCGAGTGGCAAACAAATCATATGCTTTTACCTTTTAAGAGCTTGTGCGAGCAAAGAAAGGTGCATGTAGATGTTGTGGTGATTGAATCAGATGATGTAGTAACTGCAGTAGCAGATGAAGTAACTAAGGATGCTATAACCAAACTTGTCGTTGGAGCTTCGTCTTCTGGTATTTTCAGAAGTAAACATAAGGGTATGTCTGCAAGAATCTCGGTATGCACTCCAACATTTTGTACGGTTTACGCTGTTTCAAAGGGAAAATTGTCCATACGGCAGTCAGACACGCGGATCGATGAACATATTACCGATAACACGAGTGAAATCAGCTTTTCGTCAAGCGATTCATCAAACTTCACTTCCTCCACTCAGACAGATTCTGCCTCGGTTGCACCATATGCTGCCTTACACCCCTCTCCCCTTGCAACAAGGCGACATAAAGCTCTCTCAGGTATAGAACAAACTCTCCCGAGTTTAAATGTAACTAATCATTCTAGAGGCCAGTCTCTAGATCTTGGGAGAAAGAATGCAGCTACAAGTTCTTCTAAAAACTCGGATATAGATCATGCTATAAGTCAGGCCTCTAGTTCCGGAAGCATTTCAGATGCCGAGTCTTTCTTTTATGATCAAAATTCGGCCAAGTTTGGGGCACAAGTTACTAAACCTCCATCACCAAATAGACAGGAAAACCTTAACCTTGAGCTGCAAAAGTTGAGAATTGAACTAAGACATGCGCAAGGAATGCATGCCGTAGCTCAAAGTGAGAACACTGATGCGTCACAAATGTTGAATGAACTAAACAAGAGAAGACTAGAAGAATCCATGAAAATGAAGGAGATTATTGCCAAGGAAGAGATGGCAAAGGAATTAGCAAGTCAAGAAAGAGAAAAATACGAAGCTGCAGCTAGAGAGGCTGAATATTTGAAACAATGTGCTGAAAGAGAAGCCGCAGAAAGAAAAGGATCGGAGTTGAAAGCTATCCATGCTGCCAAAGAGAAAGAAAAACTTGAGGATGCTCTGAGTGGCTCCACGCCTCAGTACCGAGTCTTTACGTGGGATGAAATAGTTTCAGCTACTTCATCTTTCTCTGAAAATCTGAGAATAGGAATGGGTGCATATGGAATGGTGTACAAGTGCACTTTGCATCACACAACTGTTGCTGTTAAAGTTATCCACTCGAATGGAATCCGCAAAAGCAAGCAATTCAAACAAGAGTTAGAGATATTGAGCAGAATTCGTCATCCAAACTTGCTTCTTCTTCTCGGTGCATGTCCTGATCACGGATGTCTTGTGTATGAATATATGGAAAACGGCAATTTAGAAGACAGACTACTCCAGAAAAACAGTAATTGCCAAATCCCATGGTTTGTTAGGTTTCGAATAGCTTGGGAGGTTGCGTCAGCTCTTTCCTTTCTTCACAGCACAAAGCCACAACCTATCATTCATCGTGACTTGAAACCGTCAAACATCTTGCTTGGTGGTAACCTTGTCAGCAAGATTGGTGATGTCGGTCTTTCTACAATCCTTGACTCAGATAACTTATCTGCCATGTATAAGGACACAGCGCCTGTTGGAACACTCAGCTATATTGATCCCGAGTATCAAAGGAGTGGTTTAATATCTACGAAATCCGATGTTTATGCTTTCGGATTAGTAATGTTACAGTTATTGACAGCAAAACCAGCAATAGCACTTACTCACATAGTTGAAACAGCTATTGATGATGGTAATTTAGCAGATATATTGGATCCAAAAGCAGGATCATGGCCTATACAAGAGACACTGGAAATAACTCGGTTAGCATTGAGCTGCACAGAGATGCGTCGTAAGGATCGACCTGATTTGTTAGATCACGTGCTTCCAGCGCTAGAGAACTTGAAAGAAGTTGCTGATAAGGCTCAACATTCGGCTTCAATAGTTACTATAAAATCCAAACCTCTCAACCATTTTATATGTCCTATACTTCAGGATGTGATGAATGATCCTTGTGTTGCTGCAGATGGATATACATACGATCGCAAAGCAATTGAAAAGTGGCTTGAAGATCACGACAAATCACCGATGACAAATATGGTTTTACCTCATAAGCATCTAATTCCTAATTACACACTTTTATCAGCAATTTTGGAATGGAAGACCTTATAA 2298 0.4099 MDRIQEGDENEGVLIFKLIHVRAVIKGVPTPMGDVLPLSQVRNDVAMAFKREIEWQTNHMLLPFKSLCEQRKVHVDVVVIESDDVVTAVADEVTKDAITKLVVGASSSGIFRSKHKGMSARISVCTPTFCTVYAVSKGKLSIRQSDTRIDEHITDNTSEISFSSSDSSNFTSSTQTDSASVAPYAALHPSPLATRRHKALSGIEQTLPSLNVTNHSRGQSLDLGRKNAATSSSKNSDIDHAISQASSSGSISDAESFFYDQNSAKFGAQVTKPPSPNRQENLNLELQKLRIELRHAQGMHAVAQSENTDASQMLNELNKRRLEESMKMKEIIAKEEMAKELASQEREKYEAAAREAEYLKQCAEREAAERKGSELKAIHAAKEKEKLEDALSGSTPQYRVFTWDEIVSATSSFSENLRIGMGAYGMVYKCTLHHTTVAVKVIHSNGIRKSKQFKQELEILSRIRHPNLLLLLGACPDHGCLVYEYMENGNLEDRLLQKNSNCQIPWFVRFRIAWEVASALSFLHSTKPQPIIHRDLKPSNILLGGNLVSKIGDVGLSTILDSDNLSAMYKDTAPVGTLSYIDPEYQRSGLISTKSDVYAFGLVMLQLLTAKPAIALTHIVETAIDDGNLADILDPKAGSWPIQETLEITRLALSCTEMRRKDRPDLLDHVLPALENLKEVADKAQHSASIVTIKSKPLNHFICPILQDVMNDPCVAADGYTYDRKAIEKWLEDHDKSPMTNMVLPHKHLIPNYTLLSAILEWKTL 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00105 765 SUPERFAMILY Protein kinase-like (PK-like) 394 667 IPR011009 -
Vifa2g00105 765 MobiDBLite consensus disorder prediction 210 246 - -
Vifa2g00105 765 ProSiteProfiles U-box domain profile. 696 765 IPR003613 GO:0004842|GO:0016567
Vifa2g00105 765 CDD RING-Ubox_WDSUB1-like 699 752 - -
Vifa2g00105 765 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 699 765 IPR013083 -
Vifa2g00105 765 Pfam Protein kinase domain 416 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00105 765 SMART serkin_6 413 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00105 765 ProSitePatterns Protein kinases ATP-binding region signature. 419 440 IPR017441 GO:0005524
Vifa2g00105 765 Gene3D Transferase(Phosphotransferase) domain 1 486 696 - -
Vifa2g00105 765 ProSitePatterns Serine/Threonine protein kinases active-site signature. 531 543 IPR008271 GO:0004672|GO:0006468
Vifa2g00105 765 ProSiteProfiles Protein kinase domain profile. 413 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00105 765 MobiDBLite consensus disorder prediction 160 181 - -
Vifa2g00105 765 Pfam U-box domain 700 763 IPR003613 GO:0004842|GO:0016567
Vifa2g00105 765 SUPERFAMILY RING/U-box 696 763 - -
Vifa2g00105 765 Coils Coil 279 320 - -
Vifa2g00105 765 CDD STK_N 16 138 - -
Vifa2g00105 765 Gene3D Phosphorylase Kinase; domain 1 391 485 - -
Vifa2g00105 765 SMART Ubox_2 700 762 IPR003613 GO:0004842|GO:0016567
Vifa2g00105 765 Coils Coil 332 366 - -
Vifa2g00105 765 MobiDBLite consensus disorder prediction 160 182 - -
Vifa2g00105 765 PANTHER OS02G0152300 PROTEIN 16 760 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00105 Vifa-Chr2 11282704 11286321 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00105 11 764 U-box Gene Family AT4G25160 52.146 0.0 786
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vifa2g00105 Pkinase 2.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00105 - - gsj:114409387 1069.68