Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00104 ATGAATAGGATTAAAGAGGGGAATGAAAGTAGCCGAACTCGGCATTCGGTTGTGGCTCTTGCAATCAAGGGGAACAAGAAAAGCAAGTATGTGGTACAGTGGACACTCAACAAGTTTGTTCCTGAGGGAATGATTATCTTCAAGTTGATACATGTTCATGCTGGTATAATTGGAGTCCCTACACCAATGGGAAATTATCTCCCGATTTCACAAGTGCGTACTGATGTAGCGGCCGCTTACAAAAAGGAAATGGAGTGGAAAACACATCAAATGCTTCTACCTTTTAAGAAAATGTGCGAGCAAAGGAAGGTGCATGTAGATCTTGTAGTAATCGAATCGGATGATGTTGCATCCGCCGTAGCAGAGGAAGTAACCAAGGACGCGATTACCAAGTTAGTCGTCGGAGCTTCATCTGGCGGCTTATTTAAAAGTAAACATAAGGGTATGTCTGCGAAAATTTCGGCATGTACTCCGAGATATTGTACAGTATATGCTGTTTCAAAAGGAAATTTGTCCATACGGCCGTCAGACATGCAGGTTGATGAAAGCATTACAGATGACACGAGTGAAATCAGTTTTTCCTCAAGCAGTTCATCGAACTATACTTCTACCACTCAGACAGATTCTGGCTCGGTTGCATCGTATGCTGCTTTACATTCCTCGTCTTTGGCAACACAACGATTTCAAGCTCTTTCAAGTTTGAATCAGACCCTTCTAAGCACAGCTCCGGGTTCGAATGAAGCTAGTCATTCTAGAGGCCAGTCTATTGATCTTGGAAGAGAGAATGTTGCTACAAGTTCTGCTAGAAACTCAGATTTTGGCCGCGCTTTGAGTCGGGCCTCTAGTTACAGAAGCATTGCTTCAGATACTGAATTGTGGGTCACCGGTCAAAGTTCTGTTAAGGGTTCGCCACTAGCCTCTAGACTTTCGTCACCTAATAGACAGGAAAATTTTAACCTTGAGCTGGAAAAGTTGAGAATTGAACTAAGACATGCCCAGGGAATGCATGCAGTAGCTCAAACCGAGAACATCGATGCATCACGAAAGCTAAGTGAATTAAGCAAGAGGAGATCTGGAGAATCCATGAAAATGAAGGAGATTATTGCTAAAGAAGAGGTGGCCAAGGAATTAGCAAGACAAGAAATGGAGAAATATGAAGCTGCAGCGAGAGAGGCTGCGTATTTGAAAGAGTCTGCCGAACGAGAAGCTTCGGAAAGAAAAGAAACAGAATTGAAAGCTATCCGTGCTGCCAAAGAGAAAGAAAAGCTAGAGGATGCTCTAAGTGGTTCCACGCCTCAGTACCGAAAGTTTACATGGGACGAAATAGTTTCAGCTACTTCGTCTTTCTCTGAAGATTTGAGAATCGGAATGGGTGCGTACGGAATGGTGTATGAGTGCACTTTGCATCATACAACTGTCGCTGTTAAAGTTCTCCATTCTGCCGGAATCAGCCAAAGCAAGCAATTCCAGCAGGAGTTAGAGATATTGAGCAGAATTCGTCATCCAAACTTGCTTCTTCTTCTCGGTGCATGTCCTGATCACGGATGCCTTGTGTACGAATACATGGAGAACGGTAGCTTGGAGGATAGACTATTTCGGAAAAACAGCACCACCGCAATTCCATGGTTTGATAGGTTTCGAATCGCTTGGGAAATCGCGTCAGCTCTTTCCTTTCTTCACAGCACAAAGCCACAGCCTATCATCCACCGCGACTTGAAACCAGCAAACATCTTGCTTGGTGGTAACCTTGTCAGCAAGATTGGCGACATCGGTCTTTCAACAATCCTTGATTCGGATGATTTATCTACAATGTATAAAGACACTGCACCTGTTGGAACACTCAGCTACATTGATCCCGAGTATCAAAGGAGCGGTCTAATATCTACGAAATCCGATGTTTATGCGTTCGGATTAGTCATGTTACAGTTGTTGACTGCAAAACCAGCGACAGCGCTTACTCACGTGGTTGAAACAGCAATAGAAGGCGGTAACTTAACTGATATATTGGATCAAAAAGCCGGATCATGGCCATTTCAAGAAACATTAGACTTAGCTCGATTAGCTTTGAGTTGCGCAGAGCTTCGACGTAGAGACCGACCTGATTTGTTAGAACACGTGCTTCCAGCGTTGGAGAAGCTGAAAGAAGTTGCTGATAAAGCTCATCATTCTGCTTCAATGGTTACCATTAAACCGAAACCTCCAAACCATTTCATCTGCCCTATACTTCAGGATGTGATGGACGATCCGTGCGTTGCTGCAGACGGATACACGTATGACCGAAAAGCGATTGAAACTTGGCTTGAAGAGAATGAGAAATCACCAATGACAAACATGGCTTTGCCTCATAAGTTTTTGATTCCTAATTACACACTTTTATCAGCAATTTTGGAGTGGAAGTCCAAAGAAATATGA 2412 0.4349 MNRIKEGNESSRTRHSVVALAIKGNKKSKYVVQWTLNKFVPEGMIIFKLIHVHAGIIGVPTPMGNYLPISQVRTDVAAAYKKEMEWKTHQMLLPFKKMCEQRKVHVDLVVIESDDVASAVAEEVTKDAITKLVVGASSGGLFKSKHKGMSAKISACTPRYCTVYAVSKGNLSIRPSDMQVDESITDDTSEISFSSSSSSNYTSTTQTDSGSVASYAALHSSSLATQRFQALSSLNQTLLSTAPGSNEASHSRGQSIDLGRENVATSSARNSDFGRALSRASSYRSIASDTELWVTGQSSVKGSPLASRLSSPNRQENFNLELEKLRIELRHAQGMHAVAQTENIDASRKLSELSKRRSGESMKMKEIIAKEEVAKELARQEMEKYEAAAREAAYLKESAEREASERKETELKAIRAAKEKEKLEDALSGSTPQYRKFTWDEIVSATSSFSEDLRIGMGAYGMVYECTLHHTTVAVKVLHSAGISQSKQFQQELEILSRIRHPNLLLLLGACPDHGCLVYEYMENGSLEDRLFRKNSTTAIPWFDRFRIAWEIASALSFLHSTKPQPIIHRDLKPANILLGGNLVSKIGDIGLSTILDSDDLSTMYKDTAPVGTLSYIDPEYQRSGLISTKSDVYAFGLVMLQLLTAKPATALTHVVETAIEGGNLTDILDQKAGSWPFQETLDLARLALSCAELRRRDRPDLLEHVLPALEKLKEVADKAHHSASMVTIKPKPPNHFICPILQDVMDDPCVAADGYTYDRKAIETWLEENEKSPMTNMALPHKFLIPNYTLLSAILEWKSKEI 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00104 803 ProSitePatterns Protein kinases ATP-binding region signature. 455 476 IPR017441 GO:0005524
Vifa2g00104 803 Coils Coil 404 426 - -
Vifa2g00104 803 SUPERFAMILY RING/U-box 731 801 - -
Vifa2g00104 803 SMART serkin_6 449 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00104 803 ProSiteProfiles U-box domain profile. 732 803 IPR003613 GO:0004842|GO:0016567
Vifa2g00104 803 CDD RING-Ubox_WDSUB1-like 734 788 - -
Vifa2g00104 803 Gene3D HUPs 10 146 IPR014729 -
Vifa2g00104 803 ProSiteProfiles Protein kinase domain profile. 449 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00104 803 MobiDBLite consensus disorder prediction 185 206 - -
Vifa2g00104 803 ProSitePatterns Serine/Threonine protein kinases active-site signature. 567 579 IPR008271 GO:0004672|GO:0006468
Vifa2g00104 803 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 732 803 IPR013083 -
Vifa2g00104 803 Coils Coil 368 402 - -
Vifa2g00104 803 PANTHER OS02G0152300 PROTEIN 17 797 - -
Vifa2g00104 803 SMART Ubox_2 736 798 IPR003613 GO:0004842|GO:0016567
Vifa2g00104 803 Pfam Protein tyrosine and serine/threonine kinase 454 702 IPR001245 GO:0004672|GO:0006468
Vifa2g00104 803 Coils Coil 315 335 - -
Vifa2g00104 803 Pfam U-box domain 734 800 IPR003613 GO:0004842|GO:0016567
Vifa2g00104 803 Gene3D Phosphorylase Kinase; domain 1 417 521 - -
Vifa2g00104 803 Gene3D Transferase(Phosphotransferase) domain 1 522 730 - -
Vifa2g00104 803 MobiDBLite consensus disorder prediction 177 206 - -
Vifa2g00104 803 CDD STK_N 17 169 - -
Vifa2g00104 803 SUPERFAMILY Protein kinase-like (PK-like) 431 704 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00104 Vifa-Chr2 11155882 11160103 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00104 18 800 U-box Gene Family AT4G25160 52.555 0.0 826
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vifa2g00104 PK_Tyr_Ser-Thr 1.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00104 - - gsj:114409387 1167.53