Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00103 ATGAATAGGATTAAAGAGGGGAATGAAAGTAGCCGAACTCGGCATTCGGTTGTGGCTCTTGCAATCAAGGGGAACAAGAAAAGCAAGTATGTGGTACAGTGGACACTCAACAAGTTTGTTCCTGAGGGAATGATTATCTTCAAGTTGATACATGTTCATGCTGTGGGAAATTATCTCCCGATTTCACAAGTGCGTACTGATGTAGCGGCCGCTTACAAAAAGGAAATGGAGTGGAAAACACATCAAATGCTTCTACCTTTTAAGAAAATGTGCGAGCAAAGGAAGGTGCATGTAGATCTTGTAGTAATCGAATCGGATGATGTTGCATCCGCCGTAGCAGAGGAAGTAACCAAGGACGCGATTACCAAGTTAGTCGTCGGAGCTTCATCTGGCGGCTTATTTAAAAGTAAACATAAGGGTATGTCTGCGAAAATTTCGGCATGTACTCCGAGATATTGTACAGTATATGCTGTTTCAAAAGGAAATTTGTCCATACGGCCGTCAGACATGCAGGTTGATGAAAGCATTACAGATGACACGAGTGAAATCAGTTTTTCCTCAAGCAGTTCATCGAACTATACTTCTACCACTCAGACAGATTCTGGCTCGGTTGCATCGTATGCTGCTTTACATTCCTCGTCTTTGGCAACACAACGATTTCAAGCTCTTTCAAGTTTGAATCAGACCCTTCTAAGCACAGCTCCGGGTTCGAATGAAGCTAGTCATTCTAGAGGCCAGTCTATTGATCTTGGAAGAGAGAATGTTGCTACAAGTTCTGCTAGAAACTCAGATTTTGGCCGCGCTTTGAGTCGGGCCTCTAGTTACAGAAGCATTGCTTCAGATACTGAATTGTGGGTCACCGGTCAAAGTTCTGTTAAGGGTTCGCCACTAGCCTCTAGACTTTCGTCACCTAATAGACAGGAAAATTTTAACCTTGAGCTGGAAAAGTTGAGAATTGAACTAAGACATGCCCAGGGAATGCATGCAGTAGCTCAAACCGAGAACATCGATGCATCACGAAAGCTAAGTGAATTAAGCAAGAGGAGATCTGGAGAATCCATGAAAATGAAGGAGATTATTGCTAAAGAAGAGGTGGCCAAGGAATTAGCAAGACAAGAAATGGAGAAATATGAAGCTGCAGCGAGAGAGGCTGCGTATTTGAAAGAGTCTGCCGAACGAGAAGCTTCGGAAAGAAAAGAAACAGAATTGAAAGCTATCCGTGCTGCCAAAGAGAAAGAAAAGCTAGAGGATGCTCTAAGTGGTTCCACGCCTCAGTACCGAAAGTTTACATGGGACGAAATAGTTTCAGCTACTTCGTCTTTCTCTGAAGATTTGAGAATCGGAATGGGTGCGTACGGAATGGTGTATGAGTGCACTTTGCATCATACAACTGTCGCTGTTAAAGTTCTCCATTCTGCCGGAATCAGCCAAAGCAAGCAATTCCAGCAGGAGTTAGAGATATTGAGCAGAATTCGTCATCCAAACTTGCTTCTTCTTCTCGGTGCATGTCCTGATCACGGATGCCTTGTGTACGAATACATGGAGAACGGTAGCTTGGAGGATAGACTATTTCGGAAAAACAGCACCACCGCAATTCCATGGTTTGATAGGTTTCGAATCGCTTGGGAAATCGCGTCAGCTCTTTCCTTTCTTCACAGCACAAAGCCACAGCCTATCATCCACCGCGACTTGAAACCAGCAAACATCTTGCTTGGTGGTAACCTTGTCAGCAAGATTGGCGACATCGGTCTTTCAACAATCCTTGATTCGGATGATTTATCTACAATGTATAAAGACACTGCACCTGTTGGAACACTCAGCTACATTGATCCCGAGTATCAAAGGAGCGGTCTAATATCTACGAAATCCGATGTTTATGCGTTCGGATTAGTCATGTTACAGTTGTTGACTGCAAAACCAGCGACAGCGCTTACTCACGTGGTTGAAACAGCAATAGAAGGCGGTAACTTAACTGATATATTGGATCAAAAAGCCGGATCATGGCCATTTCAAGAAACATTAGACTTAGCTCGATTAGCTTTGAGTTGCGCAGAGCTTCGACGTAGAGACCGACCTGATTTGTTAGAACACGTGCTTCCAGCGTTGGAGAAGCTGAAAGAAGTTGCTGATAAAGCTCATCATTCTGCTTCAATGGTTACCATTAAACCGAAACCTCCAAACCATTTCATCTGCCCTATACTTCAGGATGTGATGGACGATCCGTGCGTTGCTGCAGACGGATACACGTATGACCGAAAAGCGATTGAAACTTGGCTTGAAGAGAATGAGAAATCACCAATGACAAACATGGCTTTGCCTCATAAGTTTTTGATTCCTAATTACACACTTTTATCAGCAATTTTGGAGTGGAAGTCCAAAGAAATATGA 2388 0.4351 MNRIKEGNESSRTRHSVVALAIKGNKKSKYVVQWTLNKFVPEGMIIFKLIHVHAVGNYLPISQVRTDVAAAYKKEMEWKTHQMLLPFKKMCEQRKVHVDLVVIESDDVASAVAEEVTKDAITKLVVGASSGGLFKSKHKGMSAKISACTPRYCTVYAVSKGNLSIRPSDMQVDESITDDTSEISFSSSSSSNYTSTTQTDSGSVASYAALHSSSLATQRFQALSSLNQTLLSTAPGSNEASHSRGQSIDLGRENVATSSARNSDFGRALSRASSYRSIASDTELWVTGQSSVKGSPLASRLSSPNRQENFNLELEKLRIELRHAQGMHAVAQTENIDASRKLSELSKRRSGESMKMKEIIAKEEVAKELARQEMEKYEAAAREAAYLKESAEREASERKETELKAIRAAKEKEKLEDALSGSTPQYRKFTWDEIVSATSSFSEDLRIGMGAYGMVYECTLHHTTVAVKVLHSAGISQSKQFQQELEILSRIRHPNLLLLLGACPDHGCLVYEYMENGSLEDRLFRKNSTTAIPWFDRFRIAWEIASALSFLHSTKPQPIIHRDLKPANILLGGNLVSKIGDIGLSTILDSDDLSTMYKDTAPVGTLSYIDPEYQRSGLISTKSDVYAFGLVMLQLLTAKPATALTHVVETAIEGGNLTDILDQKAGSWPFQETLDLARLALSCAELRRRDRPDLLEHVLPALEKLKEVADKAHHSASMVTIKPKPPNHFICPILQDVMDDPCVAADGYTYDRKAIETWLEENEKSPMTNMALPHKFLIPNYTLLSAILEWKSKEI 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00103 795 SMART serkin_6 441 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00103 795 Gene3D Phosphorylase Kinase; domain 1 409 513 - -
Vifa2g00103 795 ProSitePatterns Protein kinases ATP-binding region signature. 447 468 IPR017441 GO:0005524
Vifa2g00103 795 Coils Coil 360 394 - -
Vifa2g00103 795 ProSitePatterns Serine/Threonine protein kinases active-site signature. 559 571 IPR008271 GO:0004672|GO:0006468
Vifa2g00103 795 Gene3D Transferase(Phosphotransferase) domain 1 514 722 - -
Vifa2g00103 795 PANTHER OS02G0152300 PROTEIN 17 789 - -
Vifa2g00103 795 Coils Coil 307 327 - -
Vifa2g00103 795 MobiDBLite consensus disorder prediction 169 198 - -
Vifa2g00103 795 CDD STK_N 17 161 - -
Vifa2g00103 795 Pfam U-box domain 726 792 IPR003613 GO:0004842|GO:0016567
Vifa2g00103 795 Coils Coil 396 418 - -
Vifa2g00103 795 SMART Ubox_2 728 790 IPR003613 GO:0004842|GO:0016567
Vifa2g00103 795 ProSiteProfiles Protein kinase domain profile. 441 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00103 795 Gene3D HUPs 10 138 IPR014729 -
Vifa2g00103 795 SUPERFAMILY RING/U-box 723 793 - -
Vifa2g00103 795 CDD RING-Ubox_WDSUB1-like 726 780 - -
Vifa2g00103 795 Pfam Protein tyrosine and serine/threonine kinase 446 694 IPR001245 GO:0004672|GO:0006468
Vifa2g00103 795 MobiDBLite consensus disorder prediction 177 198 - -
Vifa2g00103 795 SUPERFAMILY Protein kinase-like (PK-like) 423 696 IPR011009 -
Vifa2g00103 795 ProSiteProfiles U-box domain profile. 724 795 IPR003613 GO:0004842|GO:0016567
Vifa2g00103 795 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 724 795 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00103 Vifa-Chr2 11155882 11160103 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00103 18 792 U-box Gene Family AT4G25160 51.825 0.0 806
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vifa2g00103 PK_Tyr_Ser-Thr 1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00103 - - gsj:114409387 1145.95