Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00101 ATGAACCAGCATGTACATTACTGGCAAATTCAAAAACCTTCTCTTCCTGTAAAGATTCAGCAGGATAACGTTATTGGAGGTCTGAGTTCAGAAAGGAATGGTGACGGGAAGGCTCAAGATTCAGAGCCTCCAACTCCCCATTCTGTTCTGAAAATGGGATTGAGAGATCGTAGTAGCAGCATGGAGGATCCAGATGGGACATTGGCTAGTGTTGCGCAATGCATTGAGCAGCTGCGTCAGAGCTCGTCTTCTGTGCATGAGAAAGAGTATTCCTTAAGGCAGTTATTGGATCTTATAGATATGCGTGAAAATGCATTTAGTGCTGTTGGATCTCACTCTCAGGCTGTTCCAGTGCTTGTTTCCCTTCTCCGGTCAGGTTCGTTGAATGTGAAGATCCAGGCAGCAACTGTTTTGGGATCACTTTGTAAAGAAAATGAGCTGAGGGTGAAAGTCTTGCTTGGAGGTTGTATTCCTCCATTGCTTGGTCTCCTAAAGTCCAGTTCTACTGAAGCCCGAATTGCCGCTGCAAAGACTATATATGCTGTCTCTCAAGGTGGTGCAAAAGATCACGTTGGTTCCAAAAAATTTTCAACTGAAGGAGTAGTACCCGTGCTTTGGGAGCAGTTGCGAGCTGGCCCGAAAACCGAAAATGTAGTTGAAACTTTATTGACAGGAACATTGAAAAATCTCTCCAACAGTGCTGAGGGATTCTGGAACTCAACAGTTCAATCTGGAGGAGTGGACATATTAGTGAAGTTATTGGCAACAGGGCAGCCTAGCACTTTAGCCAGTGTTTGA 798 0.4486 MNQHVHYWQIQKPSLPVKIQQDNVIGGLSSERNGDGKAQDSEPPTPHSVLKMGLRDRSSSMEDPDGTLASVAQCIEQLRQSSSSVHEKEYSLRQLLDLIDMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSTEARIAAAKTIYAVSQGGAKDHVGSKKFSTEGVVPVLWEQLRAGPKTENVVETLLTGTLKNLSNSAEGFWNSTVQSGGVDILVKLLATGQPSTLASV 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00101 265 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 37 264 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Vifa2g00101 265 MobiDBLite consensus disorder prediction 26 47 - -
Vifa2g00101 265 Pfam Armadillo/beta-catenin-like repeat 112 142 IPR000225 GO:0005515
Vifa2g00101 265 Gene3D - 56 265 IPR011989 -
Vifa2g00101 265 SUPERFAMILY ARM repeat 73 262 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00101 Vifa-Chr2 10777467 10779175 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00101 82 259 U-box Gene Family AT2G28830 31.492 2.06e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00101 - - cam:101494820 417.542