Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00094 ATGGAACTGAAGGCAAATCATACATCTCTCCTTGCTGAAACTGCAACATTAACAAGGACAAGGTCAAGGCTCGGCACGCCTTCGAGTCTGTCTTGTTCTCCTACAGGTGCTTCGACTTTTCTCCACGGTCCCTCGCTAACTATTCCAAGGAAGAAAATAGGAGTTCTTGACGATGTTCGTTCTAATGGTTGGCTCGATGCAATGAGATCGTCTTCTCCTACTCACAAGAAAATATCTATGGATGTTGGTCACAGTGTTCCGTCTTCTGAAGCCGATGCTGCTTACTTAACCTGGCTGCTAGAGTTTCCATCCGCACTTTCGTCTTTTGAGCAAATTACTAACTGTGCAAAAGGCAAGAAAATAGCATTGTTTCTCGATTATGACGGGACTCTTTCGCCGATTGTTGACAATCCAGACCGCGCTTTCATGTCCGACAAGATGCGCGCTGCTGTTAAAAGCGTGGCGGAGTATTTTCCAACCGCAATAATTAGCGGAAGAAGTCGCGAAAAGGTACATGAGTTTGTTGGCTTGACCGAACTTCATTATGCTGGTAGTCATGGAATGGACATTATCGGTCCTGTTAGAGAATCGGTATCTGATAATCACCCGAATTGCATTAGATCTACTGATAAGAAGGGTAAGGAAGTTAATTTATTCCAACCTGCTGCTGATTTCCTGCCTATGATTGATGAGGTACGGATGTTGCTCGTTGACTGTATACGAGACATCAAAGGAGCAAAAATTGAGAATAATAAGTTCTGTGTCTCTGTACATTATCGTAATGTGGATGAAGAGAATTGGGATTTGGTGGCACAACGCGTTTTTGATATTATGAAAGACTATCCACATTTACGATTAACTCACGGTCGAAAGGTCTTAGAGGTTCGACCGGTGATTGACTGGGATAAGGGAAAAGCTGTTACATTTTTGTTAGAGTCACTCGGACTTAACGATGATGACGATGTTCTAGCTATATATATCGGTGATGATCGGACAGACGAAGATGCATTTAAGGTTTTGAGTGAAGTTAATAAAGGTTTCGGAATCTTAGTTTCTTCGGCCCCTAAAGAAAGCAACGCGGTTTACTCTCTTTGTGATCCTTCTGAGGTGATGGAATTTCTCAAATCACTTGTGGCATGGAAATCAAACTCTTTACTATAA 1161 0.4238 MELKANHTSLLAETATLTRTRSRLGTPSSLSCSPTGASTFLHGPSLTIPRKKIGVLDDVRSNGWLDAMRSSSPTHKKISMDVGHSVPSSEADAAYLTWLLEFPSALSSFEQITNCAKGKKIALFLDYDGTLSPIVDNPDRAFMSDKMRAAVKSVAEYFPTAIISGRSREKVHEFVGLTELHYAGSHGMDIIGPVRESVSDNHPNCIRSTDKKGKEVNLFQPAADFLPMIDEVRMLLVDCIRDIKGAKIENNKFCVSVHYRNVDEENWDLVAQRVFDIMKDYPHLRLTHGRKVLEVRPVIDWDKGKAVTFLLESLGLNDDDDVLAIYIGDDRTDEDAFKVLSEVNKGFGILVSSAPKESNAVYSLCDPSEVMEFLKSLVAWKSNSLL 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00094 386 SUPERFAMILY HAD-like 122 380 IPR036412 -
Vifa2g00094 386 FunFam Trehalose 6-phosphate phosphatase 228 386 - -
Vifa2g00094 386 CDD HAD_TPP 122 372 - -
Vifa2g00094 386 FunFam Trehalose 6-phosphate phosphatase 222 298 - -
Vifa2g00094 386 NCBIfam trehalose-phosphatase 221 378 IPR003337 GO:0003824|GO:0005992
Vifa2g00094 386 Pfam Trehalose-phosphatase 124 367 IPR003337 GO:0003824|GO:0005992
Vifa2g00094 386 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 37 384 IPR044651 GO:0004805|GO:0005992
Vifa2g00094 386 NCBIfam HAD-IIB family hydrolase 123 340 IPR006379 -
Vifa2g00094 386 Gene3D - 123 363 IPR023214 -
Vifa2g00094 386 Gene3D - 204 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00094 Vifa-Chr2 10001114 10003732 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00094 119 384 Trehalose Biosynthesis Gene Families AT1G23870 26.667 7.91e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00094 K01087 - gmx:100819495 573.933