Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00089 ATGGAAATCTTTGGAAAAACATTCTTCATGCTCTTATTACTTTCTTCATTTTTCTCTATAGTCTCATCAAGAAAAGTACCTTCCACAAAAAACATTGATTGGTGGTGCAACCAAACACCACATCCTAAACCATGCAAACACTACACAACTCAAATGAACCATCATTTCAAAATCAAACATAGAGTTCAATTCAGAAGAATGCTTGTTCAACTAGCCTTAGAACAATCTCTTTTCATGCAAAAAGAATCACAACAAAACTCGTCGGTGGATCATAAAATTGTTCATGTTGATTGTTTGAAGTTGTTTGAAAACACAATCTTTCATCTCAATCGTACACTTGAAGGATTAAACAATGCAAACAAAATATGTTCACCAAATGATGCACAAACATGGCTCACAACTTCTCTCACAAACATTGAAACATGTAAAAATGGAGCTTTAGAACTCAATGCTCAAGATTTCAATTTCATTGTTCATAACAATGTCATTGAGATGATAAGGAACACCTTAGCCATCAATATGTATTTCTTGAAACACAAGAAAGAAACCGGAGAAGGGTCATTTCCAAGTTGGTTTTCGAAGCATGAGAGGAAGCTTTTGCAATCAAATTCTTCACTAAAGTTCAATCTTGTGGTGGCAAAAGATGGTTCTGGACATTTTAAGACCGTGCAAGCTGCATTAGATACTGCTGCTAAGAGAAAATATAAGACAAGATTTGTGATACATGTGAAGAAAGGTGTTTATAAAGAAAATATTGAGGTTGATGTTCATAATGATAACATTATGTTGATTGGTGATGGAAAGCAAAATACCATAATAACAAGTTCAAGAAGTGTTCAAGGAGGTTTTACTACTTATAGCTCAGCAACAGCTGGTATTGATGGACTTCACTTTATTGCGCGTGATATAACCTTCCAAAATACCGCTGGTCCACACAAGGGTCAAGCAGTAGCGCTACGATCAGCCTCAGATCTCTCTGTCTTTTACCGTTGTGCCATATTAGGTTATCAAGACACTCTCATGACTCATGCACAACGTCAATTTTACAGACAATGTTACATCTACGGCACCGTAGACTTCATCTTTGGCAATGCCGCTGTGGTATTCCAAAATTGTAACATTTTCGCGAGAAAACCATTAGATGGTCAAGCTAACATGATCACGGCCCAAGGTCGAGGCGATCCATTCCAAAATACTGGAATTTCATTCCACAATTGTCAAATTAGGGCTGCATCGGATCTAAAGCCCGTTGTCGACAAATACAAAACATACTTGGGTCGGCCTTGGCAACAATACTCAAGAGTTATGGTGATGAAATCTTTTATCGACACTTTAGTGAGTCCATTGGGTTGGTCTCCATGGGGTGATACTAATTTTGCTCAAGATACTTTGTATTATGGAGAGTATGAAAATTATGGGCCTGGTTCATCAACAAAAGAAAGAGTGAAATGGCCAGGCTATCATGTGATTACAAGCCCAAATGAAGCCTCAAAGTTTACTGTAACTGAGCTTCTTGCAGGCCCATCATGGTTGGCTACTACTACCGTGCCATTTACATCTGGTCTTTGA 1569 0.3786 MEIFGKTFFMLLLLSSFFSIVSSRKVPSTKNIDWWCNQTPHPKPCKHYTTQMNHHFKIKHRVQFRRMLVQLALEQSLFMQKESQQNSSVDHKIVHVDCLKLFENTIFHLNRTLEGLNNANKICSPNDAQTWLTTSLTNIETCKNGALELNAQDFNFIVHNNVIEMIRNTLAINMYFLKHKKETGEGSFPSWFSKHERKLLQSNSSLKFNLVVAKDGSGHFKTVQAALDTAAKRKYKTRFVIHVKKGVYKENIEVDVHNDNIMLIGDGKQNTIITSSRSVQGGFTTYSSATAGIDGLHFIARDITFQNTAGPHKGQAVALRSASDLSVFYRCAILGYQDTLMTHAQRQFYRQCYIYGTVDFIFGNAAVVFQNCNIFARKPLDGQANMITAQGRGDPFQNTGISFHNCQIRAASDLKPVVDKYKTYLGRPWQQYSRVMVMKSFIDTLVSPLGWSPWGDTNFAQDTLYYGEYENYGPGSSTKERVKWPGYHVITSPNEASKFTVTELLAGPSWLATTTVPFTSGL 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00089 522 SUPERFAMILY Pectin lyase-like 207 521 IPR011050 -
Vifa2g00089 522 CDD PMEI-like_3 34 178 - -
Vifa2g00089 522 ProSitePatterns Pectinesterase signature 2. 354 363 IPR033131 -
Vifa2g00089 522 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 176 IPR035513 -
Vifa2g00089 522 Gene3D - 203 522 IPR012334 -
Vifa2g00089 522 SMART PMEI_2 27 172 IPR006501 GO:0004857
Vifa2g00089 522 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 173 IPR035513 -
Vifa2g00089 522 FunFam Pectinesterase 203 522 - -
Vifa2g00089 522 Pfam Pectinesterase 209 507 IPR000070 GO:0030599|GO:0042545
Vifa2g00089 522 PANTHER PECTINESTERASE 18 512 - -
Vifa2g00089 522 Pfam Plant invertase/pectin methylesterase inhibitor 31 172 IPR006501 GO:0004857
Vifa2g00089 522 NCBIfam pectinesterase inhibitor domain 8 173 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00089 Vifa-Chr2 9817862 9819644 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00089 29 522 Carbohydrate Esterase AT3G47400 56.226 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00089 K01051 - gmx:100806133 795.423