Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00088 ATGGAAGCCAACCCTTTTGCAAGTTTTTCTTCCAATCATGTTCTCACATTTGTAATCTTCATCTTGCTAGCAATATCTACTAGCATCACTTTAGCATGTGATGAAAAAAATTCTACAATCCCTACAAATTCCACCAAATCCAACATTTCATACACTTCCAAACCTCCCTTAAATTCCACCCAAAAAAATGATTTCAAAACCTTTATTAAAAATTCTTGCAACTCAACCACATATCCTTATATATGTTACAAATCTTTATCCCCATATGCTTCAAAAATAGAAGAAGATCCTCTAAGACTATGCAACTTCTCCCTCTCGGCCGCGTTAAAGGCGGCCCGTGGCGCGTCATCCGCGGTATCAAAGCTTCTGAAAAGCAATGACGATGATTTGTCAAGCCTTGGTGAAGAAGTTGTGCAAGATTGCTTTGGAAATTTGGAGGATTCAATAGAACAATTGCAAGATTCTATTGATGCTATGACACATTTGGATGCTGATTTTGATAGAGAATTTCAGATTAGTAACATAAAGACTTGGGTTAGTTCTGCCATTACTAATGATCAAACTTGCTATGATGGGTTTGATGAGATGAATGTGGATTCCATACTTAGGGATAAAATTAGAACAACAGTTTTGGATGTGGCAAGGAAGACTAGTAATGCTTTGTATTTTATTAACAATAATATATATTAA 690 0.3565 MEANPFASFSSNHVLTFVIFILLAISTSITLACDEKNSTIPTNSTKSNISYTSKPPLNSTQKNDFKTFIKNSCNSTTYPYICYKSLSPYASKIEEDPLRLCNFSLSAALKAARGASSAVSKLLKSNDDDLSSLGEEVVQDCFGNLEDSIEQLQDSIDAMTHLDADFDREFQISNIKTWVSSAITNDQTCYDGFDEMNVDSILRDKIRTTVLDVARKTSNALYFINNNIY 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00088 229 CDD PMEI-like_3 72 226 - -
Vifa2g00088 229 Gene3D Invertase/pectin methylesterase inhibitor family protein 65 226 IPR035513 -
Vifa2g00088 229 SMART PMEI_2 64 223 IPR006501 GO:0004857
Vifa2g00088 229 NCBIfam pectinesterase inhibitor domain 56 226 IPR006501 GO:0004857
Vifa2g00088 229 Coils Coil 224 229 - -
Vifa2g00088 229 Pfam Plant invertase/pectin methylesterase inhibitor 68 221 IPR006501 GO:0004857
Vifa2g00088 229 PANTHER PECTINESTERASE INHIBITOR-LIKE 19 221 - -
Vifa2g00088 229 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 67 226 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00088 Vifa-Chr2 8917902 8918591 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00088 69 226 Carbohydrate Esterase AT1G53830 26.582 9.30e-13 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00088 - - gmx:100527443 263.462