Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00085 ATGGCAACCATGTTTTCCATTTATCTTTTCCTTCTAATAACTCTTGTCTCCATAACAACATCAACACCAACAAACTTCATCAAATCCTCATGTAGCACAACACTATATCCAACACTTTGTGTTGAATCTCTCTCTGTCTATGCATCAAAAATCCAACAAGATCCACACCAATTAGTCCAAACAGCTTTATCACTTAGTCTCAACAGAACTCAAACCACAAAAGCCTTTGTTAGAAAGTGCAAGTATTTCAAGAATCTTAAGCCAAGAGTATATGCTGCTCTTCATGACTGTGTTGAAGTGATAGGTGATGGTGTTGATAGGCTTAGCAGTTCATTGAAAGAGCTTAAACTTTGCAAGATCAACGGTCAGGATTTCAATTGGCATATAAGTAATGTTGAGACATGGGTTAGCTCAGCTTTGACTGATGGAAGCACTTGTAGTGATGGGTTTGGTGGAAAAGCACTTGATGGAAGAATCAAAAGCTCTATTAGATCTAGAATGGTTGATGTTGCTCAAGTTACTAGTAATGCTCTTTCACTCATTAATCAATATGCTGCTAATCACTAG 567 0.3739 MATMFSIYLFLLITLVSITTSTPTNFIKSSCSTTLYPTLCVESLSVYASKIQQDPHQLVQTALSLSLNRTQTTKAFVRKCKYFKNLKPRVYAALHDCVEVIGDGVDRLSSSLKELKLCKINGQDFNWHISNVETWVSSALTDGSTCSDGFGGKALDGRIKSSIRSRMVDVAQVTSNALSLINQYAANH 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00085 188 Gene3D Invertase/pectin methylesterase inhibitor family protein 22 184 IPR035513 -
Vifa2g00085 188 NCBIfam pectinesterase inhibitor domain 4 184 IPR006501 GO:0004857
Vifa2g00085 188 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 25 184 IPR035513 -
Vifa2g00085 188 Pfam Plant invertase/pectin methylesterase inhibitor 25 180 IPR006501 GO:0004857
Vifa2g00085 188 CDD PMEI-like_3 29 186 - -
Vifa2g00085 188 SMART PMEI_2 22 180 IPR006501 GO:0004857
Vifa2g00085 188 PANTHER PECTINESTERASE INHIBITOR-LIKE 9 180 - -
Vifa2g00085 188 FunFam Pectin methylesterase inhibitor 1 22 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00085 Vifa-Chr2 8875469 8876035 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00085 16 181 Carbohydrate Esterase AT1G53830 31.429 2.18e-19 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00085 - - lja:Lj0g3v0070759.1 270.781