LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa2g00085	ATGGCAACCATGTTTTCCATTTATCTTTTCCTTCTAATAACTCTTGTCTCCATAACAACATCAACACCAACAAACTTCATCAAATCCTCATGTAGCACAACACTATATCCAACACTTTGTGTTGAATCTCTCTCTGTCTATGCATCAAAAATCCAACAAGATCCACACCAATTAGTCCAAACAGCTTTATCACTTAGTCTCAACAGAACTCAAACCACAAAAGCCTTTGTTAGAAAGTGCAAGTATTTCAAGAATCTTAAGCCAAGAGTATATGCTGCTCTTCATGACTGTGTTGAAGTGATAGGTGATGGTGTTGATAGGCTTAGCAGTTCATTGAAAGAGCTTAAACTTTGCAAGATCAACGGTCAGGATTTCAATTGGCATATAAGTAATGTTGAGACATGGGTTAGCTCAGCTTTGACTGATGGAAGCACTTGTAGTGATGGGTTTGGTGGAAAAGCACTTGATGGAAGAATCAAAAGCTCTATTAGATCTAGAATGGTTGATGTTGCTCAAGTTACTAGTAATGCTCTTTCACTCATTAATCAATATGCTGCTAATCACTAG	567	0.3739	MATMFSIYLFLLITLVSITTSTPTNFIKSSCSTTLYPTLCVESLSVYASKIQQDPHQLVQTALSLSLNRTQTTKAFVRKCKYFKNLKPRVYAALHDCVEVIGDGVDRLSSSLKELKLCKINGQDFNWHISNVETWVSSALTDGSTCSDGFGGKALDGRIKSSIRSRMVDVAQVTSNALSLINQYAANH	188

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa2g00085	188	Gene3D	Invertase/pectin methylesterase inhibitor family protein	22	184	IPR035513	-
	Vifa2g00085	188	NCBIfam	pectinesterase inhibitor domain	4	184	IPR006501	GO:0004857
	Vifa2g00085	188	SUPERFAMILY	Plant invertase/pectin methylesterase inhibitor	25	184	IPR035513	-
	Vifa2g00085	188	Pfam	Plant invertase/pectin methylesterase inhibitor	25	180	IPR006501	GO:0004857
	Vifa2g00085	188	CDD	PMEI-like_3	29	186	-	-
	Vifa2g00085	188	SMART	PMEI_2	22	180	IPR006501	GO:0004857
	Vifa2g00085	188	PANTHER	PECTINESTERASE INHIBITOR-LIKE	9	180	-	-
	Vifa2g00085	188	FunFam	Pectin methylesterase inhibitor 1	22	184	-	-

Showing 1 to 8 of 8 entries

Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa2g00085	Vifa-Chr2	8875469	8876035	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa2g00085	16	181	Carbohydrate Esterase	AT1G53830	31.429	2.18e-19	83.2

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa2g00085	-		-	lja:Lj0g3v0070759.1	270.781

Showing 1 to 1 of 1 entries