Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00084 ATGGCGAAGTTTACCCTTCTATTCCTTCTCCTTACTCTACTCTCAATGGCAACATCAACACCAACAAGTTTCATCACATCCTCATGTAGCACAACACCATATCCAACACTTTGTGTTGAATCTCTTTCTGTCTACGCAACAACAATCCAACAAGATCCACACCAATTAGTCCAAACAGCTTTATCACTTAGCCTCAACAAAACTCAATCCACAAAAGGCTTTGTTACAATGTGCAATACCTTCAAAAATCTTAAACCAATAGAATATGCTGCTCTTCATGATTGTGCTGAAGAAATTAGTGATAGTGTTAATAGACTTAGCCGTTCATTGAATGAGCTTAAACTTTGCAAGATCAATGGTCAAGATTTCAATTGGCATATAAGCAATGTTGAGACATGGGTTAGCTCAGCTTTGACTGATGAAACCACTTGTGGTGAAGGATTTGGTGCTAAAGCACTTGATGGAAGAATCAAAGCCTCTATTAAATCTAGAATGGTTAATGTTGCCAAATTCACTAGTAATGCTCTTTCACTTATTGATCAATATGCTGCTAAGCACATGGAAGCAATGAAACTCTAG 579 0.3748 MAKFTLLFLLLTLLSMATSTPTSFITSSCSTTPYPTLCVESLSVYATTIQQDPHQLVQTALSLSLNKTQSTKGFVTMCNTFKNLKPIEYAALHDCAEEISDSVNRLSRSLNELKLCKINGQDFNWHISNVETWVSSALTDETTCGEGFGAKALDGRIKASIKSRMVNVAKFTSNALSLIDQYAAKHMEAMKL 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00084 192 FunFam Pectinesterase inhibitor 3 20 183 - -
Vifa2g00084 192 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 23 181 IPR035513 -
Vifa2g00084 192 CDD PMEI-like_3 27 184 - -
Vifa2g00084 192 Gene3D Invertase/pectin methylesterase inhibitor family protein 20 182 IPR035513 -
Vifa2g00084 192 Pfam Plant invertase/pectin methylesterase inhibitor 23 178 IPR006501 GO:0004857
Vifa2g00084 192 NCBIfam pectinesterase inhibitor domain 4 182 IPR006501 GO:0004857
Vifa2g00084 192 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
Vifa2g00084 192 PANTHER PECTINESTERASE INHIBITOR-LIKE 6 178 - -
Vifa2g00084 192 SMART PMEI_2 20 178 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00084 Vifa-Chr2 8753292 8753870 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00084 18 179 Carbohydrate Esterase AT5G53370 27.607 6.97e-16 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00084 - - lja:Lj0g3v0070759.1 270.011