Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00071 ATGAAGATTCCCGGTTTCGTTCTTGGCGCATTGAGGAATTTGAAGAATCTTTATTTAGGGAATAATCTTTTTAATGGCGAAATACCTAATGAGCTTGGAAGTGTTTGTGGGAGTTTGGAGATTCTTGATCTTTCTATGAATAAGCTTTCTGGCGAGTTTCCTTTGGTTTTTGGAAATTGTTCGTCGTTGAAGATTCTTAACCTGACTAAGAATTATCTCTATGGTGATTTCCTCGACACCGTTGCTAGCAAGCTTTCAAATCTTAGGTATCTGTTGGTGTCGTTCAACAACATAACCGGGAATGTTCCTTTGTCGATTGTTGCAAACTGTACGCAACTTCGAGTTCTTGATTTAAGTGCCAACGGTTTCACGGGCAATGTTCATTCGATATTCTGTCCTTCTAAATTGGAGAAGTTGCTTTTAGCTGATAATTATCTTTCGGGGAACGTTCCTGCGAAACTCGGTGAATGCAAGAGTTTGAAGACTATTGATTTTAGCTTCAATAATTTGAGTGGTGTGATACCTTTGGAAGTTTGGTTTTTGCCTAATCTTTCTGATTTGATTATGTGGGCAAATAGTCTCACCGGCGAGATTCCGGAGGGAATTTGCGTCAATGGAGGGAACCTCGAGACATTGATTCTTAACAACAATTTCATTTCTGGTTTGATTCCTAAGTCTATTGCAAATTGTACCAACATGATTTGGGTTTCGCTAGCTAACAACCGCATTACTGGAGAAATACCTGTTGGTATTGGGAATTTGAACGAACTCGCTATTCTCCAATTAGGTAACAATTTGCTGGTCGGAAATATACCTCCCGACATTGGAATGTGCAAGAGATTAATATGGTTGGATTTGACTAGCAATAATCTCACCGGTCCTATTCCGCCTAAGCTCACGAACCAAGCTGGATTGGTTGTTCCGGGGAGAGTTTCCGGTAAACAATTTGTATTTGTGAGAAATGAAGGCGGAACTAATTGTAGAGGCGCTGGAGGACTCGTTGAGTTTGAAGGTATAAGGGTCGAGAGGCTCGAAAATTTTCCTATGGTACATTCTTGTCCGTTGACAAGAATATATTCGGGTTATACAGTTTATACTTTTACCAACCGTGGAAGCCTGATCTACCTTGATCTTTCCTACAATTTCTTGTCGGGGAGTATTCCGGGAAGTTTCGGTACAATGTCCTATTTGCAGGTCTTAAATCTAGGACACAATTGGCTCGATGGAAAAATTCCAGAAACTTTCGGTCTTTTAAAAGCTATAGGAGTTCTTGATTTATCTCATAATAACCTTCAAGGATTCATACCTGGATCATTACAATCTCTATCGTTTCTCAGTGATTTCGATGTGTCGAATAATAACCTCAGCGGACCGATTCCTTCTGGAGGTCAGCTGACAACTTTCCCGGCGTCTCGATACGAGAACAACTCGGGCCTTTGCGGTGTTCCGTTACCGTTATGCAGTGCTTCAAATCAATCAGTAGGTTATAATCCGGGGAAGAAGAAGACGCAATCTATTGCAGTTTTGGGTGGCATTTCCGTCCTGTTCTTCCTCTTGTTTATCATTGTGGTTTTATTGGCTTTATATAGAGCTCGAAAGGTGCGGGAGAAGGACGAATTGAGAGAAAAATACATGGAAAGTCTTCCAACTTCTGGTACCAATAGTTGGAAGCTTTCTGGCTTTCGTGAGCCTCTGAGCATCAATGTCGCCACGTTTGAGAAGCCTTTGCGTAAGTTGACGTTCGCGCATCTTCTCGAGGCTACAAATGGTTTCAGCTCCGAAAGCTTGATAGGTTCAGGAGGTTTTGGCGAAGTCTATAAAGCTAAGATGAAAGATGGTAGTGTCGTTGCGATCAAGAAACTCATTCATGTCACAGGTCAGGGAGACAGAGAGTTCATGGCCGAAATGGAAACGATTGGGAAGATTAAACACCGGAACCTTGTTCCGCTTCTCGGTTACTGTAAAGTCGGAGATGAGAGGCTCCTTGTGTATGAGTACATGAAATATGGAAGTCTTGAAACTGTTCTACACGAGAGAACCAAAAATTCAAAGCTTGCTTGGGAAACAAGAAAGAACATCGCACTAGGATCAGCAAGAGGTCTTGCATTTCTTCACCATAGTTGCATACCTCATATCATACATAGAGACATGAAATCCAGCAACATTCTTCTCGACGAAAATTTCGAGGCTAGAGTATCGGATTTCGGTATGGCGAGATTGGTTAATGCTCTCGACACACATCTCACAGTTAGCACACTTGCAGGAACACCAGGTTACGTACCACCGGAATACTACCAGAGTTTCCGATGCACGGCAAAAGGGGATGTTTATAGTTATGGTGTCATATTGCTAGAACTTCTATCAGGTAAGAGACCGATCGACGCATCCGAGTTCGGCGACGATAACAATCTTGTTGGATGGTGTAAGAAGCTTTATAGAGAGAGAAGAGTCAGTGAAATACTCGATCCTGATTTGGTTTCACAAACATCTAGTGAAGGTGAGGTTCTTCAATATTTGAGAATTGCTTTTGAATGTTTGGAGGAAAGACCATACCGGCGGCCGACGATGATACAAGTGATGGCAATGTTTAAAGAGCTTCAAGCTGTTGATACAGATGATGATAGTGTTGTTGATGGTTTCTCTATGAAAGACAATGTGATTGATGAAGCATGA 2673 0.4183 MKIPGFVLGALRNLKNLYLGNNLFNGEIPNELGSVCGSLEILDLSMNKLSGEFPLVFGNCSSLKILNLTKNYLYGDFLDTVASKLSNLRYLLVSFNNITGNVPLSIVANCTQLRVLDLSANGFTGNVHSIFCPSKLEKLLLADNYLSGNVPAKLGECKSLKTIDFSFNNLSGVIPLEVWFLPNLSDLIMWANSLTGEIPEGICVNGGNLETLILNNNFISGLIPKSIANCTNMIWVSLANNRITGEIPVGIGNLNELAILQLGNNLLVGNIPPDIGMCKRLIWLDLTSNNLTGPIPPKLTNQAGLVVPGRVSGKQFVFVRNEGGTNCRGAGGLVEFEGIRVERLENFPMVHSCPLTRIYSGYTVYTFTNRGSLIYLDLSYNFLSGSIPGSFGTMSYLQVLNLGHNWLDGKIPETFGLLKAIGVLDLSHNNLQGFIPGSLQSLSFLSDFDVSNNNLSGPIPSGGQLTTFPASRYENNSGLCGVPLPLCSASNQSVGYNPGKKKTQSIAVLGGISVLFFLLFIIVVLLALYRARKVREKDELREKYMESLPTSGTNSWKLSGFREPLSINVATFEKPLRKLTFAHLLEATNGFSSESLIGSGGFGEVYKAKMKDGSVVAIKKLIHVTGQGDREFMAEMETIGKIKHRNLVPLLGYCKVGDERLLVYEYMKYGSLETVLHERTKNSKLAWETRKNIALGSARGLAFLHHSCIPHIIHRDMKSSNILLDENFEARVSDFGMARLVNALDTHLTVSTLAGTPGYVPPEYYQSFRCTAKGDVYSYGVILLELLSGKRPIDASEFGDDNNLVGWCKKLYRERRVSEILDPDLVSQTSSEGEVLQYLRIAFECLEERPYRRPTMIQVMAMFKELQAVDTDDDSVVDGFSMKDNVIDEA 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00071 890 Gene3D Phosphorylase Kinase; domain 1 554 666 - -
Vifa2g00071 890 SMART serkin_6 591 863 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00071 890 ProSitePatterns Protein kinases ATP-binding region signature. 597 620 IPR017441 GO:0005524
Vifa2g00071 890 Gene3D Transferase(Phosphotransferase) domain 1 667 883 - -
Vifa2g00071 890 Pfam Leucine rich repeat 208 267 IPR001611 GO:0005515
Vifa2g00071 890 FunFam Brassinosteroid LRR receptor kinase 667 868 - -
Vifa2g00071 890 Pfam Brassinosteroid receptor island domain 304 368 IPR045381 -
Vifa2g00071 890 FunFam Serine/threonine-protein kinase BRI1-like 1 311 368 - -
Vifa2g00071 890 Gene3D - 311 367 - -
Vifa2g00071 890 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 83 862 - -
Vifa2g00071 890 Pfam Leucine Rich Repeat 423 442 IPR001611 GO:0005515
Vifa2g00071 890 Pfam Leucine Rich Repeat 397 415 IPR001611 GO:0005515
Vifa2g00071 890 Pfam Leucine Rich Repeat 372 392 IPR001611 GO:0005515
Vifa2g00071 890 Gene3D Ribonuclease Inhibitor 2 495 IPR032675 -
Vifa2g00071 890 SUPERFAMILY L domain-like 3 148 - -
Vifa2g00071 890 Pfam Protein kinase domain 592 861 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00071 890 SUPERFAMILY L domain-like 106 473 - -
Vifa2g00071 890 ProSiteProfiles Protein kinase domain profile. 591 866 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00071 890 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 106 307 - -
Vifa2g00071 890 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 365 487 - -
Vifa2g00071 890 ProSitePatterns Serine/Threonine protein kinases active-site signature. 712 724 IPR008271 GO:0004672|GO:0006468
Vifa2g00071 890 FunFam serine/threonine-protein kinase BRI1-like 2 552 666 - -
Vifa2g00071 890 SUPERFAMILY Protein kinase-like (PK-like) 575 868 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00071 Vifa-Chr2 5976226 5978898 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00071 2 889 Receptor kinase-like Gene Family AT1G55610 70.267 0.0 1277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vifa2g00071 Pkinase 2.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00071 - - lja:Lj0g3v0359679.1 1399.8