Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00070 ATGGCTGGGATTGATGAAAATGTTGGGCTTAATGGTGAATGGGGTCTTCCGAATCCGAGTCCGAGAACCCTATTTTCTAGGATGCTAGATGAAGAGAGTGATAATGTAACGAGACAAATCTCTGAACAATCTGAGAGTGGTAGAATTGAGGCGCAAGATGGTGATTCGGGCACTCAATTGAGCGATGCTAGTTATCGAAATGATCATAAGTTGAACTCGCGAGGGGGTCTTGTTGAAAGAATTGCTGCTAGAACCGGGTTTAATGCGCCGAGGTTGAATACAGAAAGCATTAGATCTACTGAACTTTCGCTCAATTCTGAGATTCAGTCTCCGTATTTGACTATACCGCCTGGTCTTAGTCCTACTACACTTTTGGATTCTCCTGTTTTCCTTGCGAATTCATTGGCACAACCATCTCCAACAACAGGAAAGTTTCCATTTGTCTCAAACGGAAACATCCGCGGCACAGAATTATCTTCTGATGATCAGCAAAAATCTAAACTTAATGGCTTTGGTGACATGTACGCGTCATCCTTTGCTTTCAAGCCTACACCCGATTCAGGACCCTCTTTTTATCACGGCGCTGGTAGAAAACAAACCCTTCATGGTTTTGAAGCTTCGGTTCAATCCCAAAAAGTTGATGCGACCGAGAACAAAAGTAGCCTCCATCTTAAGGCAGAATTCTCCGACTCGCCACCTCAAAAAGACAATTCTGCACCAATGGAAGAGCAAGCAGATGAAGAGGGAGAACAAAGAGTCAACGGAGACACAATTGTTGCTGGTGTTGGTGGTACTCCGTCGGAAGATGGATATAATTGGAGAAAATACGGTCAAAAGCAAGTTAAGGGTAGCGAGTTCCCGCGAAGTTACTACAAATGCACCCATTCAAATTGTCCGGTTAAAAAGAAAGTAGAACGTTCTCACGAGGGCCACATAACAGAGATCATCTATAAGGGAGCACACAACCACCCGAAACCTCCTCCAAGTCGTCGGTCAGGCATAGGGTCAGCTAACCCTCATGCCGACATGCAAGTGGACAATTCTGAACATGTTGAAGCACAGGGAAATATAGCTAACTGGAAGCCGGAAAACCTTGAAGCAACATCGGCTGCATCTGCTATTGCTGAGTACGGCAACCACTCCTCCAATCTGCAAACTCAAAATGGTATTACTCACTTAGATTCAGGTGATGCCGTGGATGGGTCATCCACTTTTTCTAACGAAGAAGAGGAAGACGATCAAGGCACTCATGGTAGTGTATCATTAGGTTATGATGCGGAAGGAGATGAATCCGAGTCGAAAAGAAGGAAACTTGAATCATATGCTGAGATGAGTGGAGCTACTAGAGCCATTCGCGAGCCTAGAGTTGTTGTGCAGACTACCAGCGAAGTAGATATCCTCGATGATGGTTATCGATGGCGGAAATATGGGCAAAAAGTTGTCAAAGGAAATCCCAACCCAAGGAGTTACTACAAGTGCACCAATGCAGGGTGCACTGTAAGGAAGCATGTGGAGAGAGCATCGCATGACCTTAAATCTGTTATCACCACATACGAGGGAAAGCACAATCATGATGTCCCCGCCGCTCGTTCCAGCAGTCACGTCAATGCGAACAACGCTTCTAATGCAGGTCAAGGGCAAGCTTCTGGTCTTCTTCAAAACCATGCTCATAGAACTGAACCATCTCAAATTCACAACGGAATGGGAAGGCCTTCACTCGGCTCATTCAACTTTCACGGAAGACAGCAGCTAGCTCATCCGCACGGCTTCTCCTTTGGCATGAATCAACACCTCTCCAACCTTGCAATGTCTGGTTTAGGCCCCTCTTCACGAATGCCTATGAATCCATTCATGGCGCAACAACAACATCAGCAACAACAACAACAGCGTGCCGCAAATGAAATGGGCTTCATGTTACCAAAGGGAGAACCAAATATGGACACAAATCCTGAACGCGGAAGCCTTAACATGCAAAACGGTTCATCATCGATGTATCAAGATATTATGAATCACATGCCTCTCGGACCTCACATGTAA 2037 0.4556 MAGIDENVGLNGEWGLPNPSPRTLFSRMLDEESDNVTRQISEQSESGRIEAQDGDSGTQLSDASYRNDHKLNSRGGLVERIAARTGFNAPRLNTESIRSTELSLNSEIQSPYLTIPPGLSPTTLLDSPVFLANSLAQPSPTTGKFPFVSNGNIRGTELSSDDQQKSKLNGFGDMYASSFAFKPTPDSGPSFYHGAGRKQTLHGFEASVQSQKVDATENKSSLHLKAEFSDSPPQKDNSAPMEEQADEEGEQRVNGDTIVAGVGGTPSEDGYNWRKYGQKQVKGSEFPRSYYKCTHSNCPVKKKVERSHEGHITEIIYKGAHNHPKPPPSRRSGIGSANPHADMQVDNSEHVEAQGNIANWKPENLEATSAASAIAEYGNHSSNLQTQNGITHLDSGDAVDGSSTFSNEEEEDDQGTHGSVSLGYDAEGDESESKRRKLESYAEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARSSSHVNANNASNAGQGQASGLLQNHAHRTEPSQIHNGMGRPSLGSFNFHGRQQLAHPHGFSFGMNQHLSNLAMSGLGPSSRMPMNPFMAQQQHQQQQQQRAANEMGFMLPKGEPNMDTNPERGSLNMQNGSSSMYQDIMNHMPLGPHM 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00070 678 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 125 548 IPR044810 GO:0003700
Vifa2g00070 678 ProSiteProfiles WRKY domain profile. 268 326 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g00070 678 MobiDBLite consensus disorder prediction 521 550 - -
Vifa2g00070 678 MobiDBLite consensus disorder prediction 1 71 - -
Vifa2g00070 678 SUPERFAMILY WRKY DNA-binding domain 265 326 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa2g00070 678 MobiDBLite consensus disorder prediction 39 66 - -
Vifa2g00070 678 SUPERFAMILY WRKY DNA-binding domain 459 527 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa2g00070 678 FunFam WRKY transcription factor 258 327 - -
Vifa2g00070 678 SMART WRKY_cls 467 526 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g00070 678 SMART WRKY_cls 267 325 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g00070 678 FunFam WRKY transcription factor 33 454 520 - -
Vifa2g00070 678 ProSiteProfiles WRKY domain profile. 462 527 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g00070 678 MobiDBLite consensus disorder prediction 318 342 - -
Vifa2g00070 678 Pfam WRKY DNA -binding domain 468 524 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g00070 678 Pfam WRKY DNA -binding domain 268 324 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g00070 678 MobiDBLite consensus disorder prediction 212 273 - -
Vifa2g00070 678 Gene3D WRKY domain 260 327 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa2g00070 678 Gene3D WRKY domain 454 520 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa2g00070 678 MobiDBLite consensus disorder prediction 529 550 - -
Vifa2g00070 678 MobiDBLite consensus disorder prediction 385 403 - -
Vifa2g00070 678 MobiDBLite consensus disorder prediction 385 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00070 Vifa-Chr2 5839101 5842030 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00070 1 673 WRKY Transcription Factor Family AT5G56270 48.634 6.41e-177 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa2g00070 WRKY 3.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00070 K18835 - gmx:100127395 956.822