Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00069 ATGGCTGGGATTGATGAAAATGTTGGGCTTAATGGTGAATGGGGTCTTCCGAATCCGAGTCCGAGAACCCTATTTTCTAGGATGCTAGATGAAGAGAGTGATAATGTAACGAGACAAATCTCTGAACAATCTGAGAGTGGTAGAATTGAGGCGCAAGATGGTGATTCGGGCACTCAATTGAGCGATGCTAGTTATCGAAATGATCATAAGTTGAACTCGCGAGGGGGTCTTGTTGAAAGAATTGCTGCTAGAACCGGGTTTAATGCGCCGAGGTTGAATACAGAAAGCATTAGATCTACTGAACTTTCGCTCAATTCTGAGATTCAGTCTCCGTATTTGACTATACCGCCTGGTCTTAGTCCTACTACACTTTTGGATTCTCCTGTTTTCCTTGCGAATTCATTGGCACAACCATCTCCAACAACAGGAAAGTTTCCATTTGTCTCAAACGGAAACATCCGCGGCACAGAATTATCTTCTGATGATCAGCAAAAATCTAAACTTAATGGCTTTGGTGACATGTACGCGTCATCCTTTGCTTTCAAGCCTACACCCGATTCAGGACCCTCTTTTTATCACGGCGCTGGTAGAAAAATAAATCAAACTACACTTCCACAGCAAACCCTTCATGGTTTTGAAGCTTCGGTTCAATCCCAAAAAGTTGATGCGACCGAGAACAAAAGTAGCCTCCATCTTAAGGCAGAATTCTCCGACTCGCCACCTCAAAAAGACAATTCTGCACCAATGGAAGAGCAAGCAGATGAAGAGGGAGAACAAAGAGTCAACGGAGACACAATTGTTGCTGGTGTTGGTGGTACTCCGTCGGAAGATGGATATAATTGGAGAAAATACGGTCAAAAGCAAGTTAAGGGTAGCGAGTTCCCGCGAAGTTACTACAAATGCACCCATTCAAATTGTCCGGTTAAAAAGAAAGTAGAACGTTCTCACGAGGGCCACATAACAGAGATCATCTATAAGGGAGCACACAACCACCCGAAACCTCCTCCAAGTCGTCGGTCAGGCATAGGGTCAGCTAACCCTCATGCCGACATGCAAGTGGACAATTCTGAACATGTTGAAGCACAGGGAAATATAGCTAACTGGAAGCCGGAAAACCTTGAAGCAACATCGGCTGCATCTGCTATTGCTGAGTACGGCAACCACTCCTCCAATCTGCAAACTCAAAATGGTATTACTCACTTAGATTCAGGTGATGCCGTGGATGGGTCATCCACTTTTTCTAACGAAGAAGAGGAAGACGATCAAGGCACTCATGGTAGTGTATCATTAGGTTATGATGCGGAAGGAGATGAATCCGAGTCGAAAAGAAGGAAACTTGAATCATATGCTGAGATGAGTGGAGCTACTAGAGCCATTCGCGAGCCTAGAGTTGTTGTGCAGACTACCAGCGAAGTAGATATCCTCGATGATGGTTATCGATGGCGGAAATATGGGCAAAAAGTTGTCAAAGGAAATCCCAACCCAAGGAGTTACTACAAGTGCACCAATGCAGGGTGCACTGTAAGGAAGCATGTGGAGAGAGCATCGCATGACCTTAAATCTGTTATCACCACATACGAGGGAAAGCACAATCATGATGTCCCCGCCGCTCGTTCCAGCAGTCACGTCAATGCGAACAACGCTTCTAATGCAGGTCAAGGGCAAGCTTCTGGTCTTCTTCAAAACCATGCTCATAGAACTGAACCATCTCAAATTCACAACGGAATGGGAAGGCCTTCACTCGGCTCATTCAACTTTCACGGAAGACAGCAGCTAGCTCATCCGCACGGCTTCTCCTTTGGCATGAATCAACACCTCTCCAACCTTGCAATGTCTGGTTTAGGCCCCTCTTCACGAATGCCTATGAATCCATTCATGGCGCAACAACAACATCAGCAACAACAACAACAGCGTGCCGCAAATGAAATGGGCTTCATGTTACCAAAGGGAGAACCAAATATGGACACAAATCCTGAACGCGGAAGCCTTAACATGCAAAACGGTTCATCATCGATGTATCAAGATATTATGAATCACATGCCTCTCGGACCTCACATGTAA 2061 0.4541 MAGIDENVGLNGEWGLPNPSPRTLFSRMLDEESDNVTRQISEQSESGRIEAQDGDSGTQLSDASYRNDHKLNSRGGLVERIAARTGFNAPRLNTESIRSTELSLNSEIQSPYLTIPPGLSPTTLLDSPVFLANSLAQPSPTTGKFPFVSNGNIRGTELSSDDQQKSKLNGFGDMYASSFAFKPTPDSGPSFYHGAGRKINQTTLPQQTLHGFEASVQSQKVDATENKSSLHLKAEFSDSPPQKDNSAPMEEQADEEGEQRVNGDTIVAGVGGTPSEDGYNWRKYGQKQVKGSEFPRSYYKCTHSNCPVKKKVERSHEGHITEIIYKGAHNHPKPPPSRRSGIGSANPHADMQVDNSEHVEAQGNIANWKPENLEATSAASAIAEYGNHSSNLQTQNGITHLDSGDAVDGSSTFSNEEEEDDQGTHGSVSLGYDAEGDESESKRRKLESYAEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARSSSHVNANNASNAGQGQASGLLQNHAHRTEPSQIHNGMGRPSLGSFNFHGRQQLAHPHGFSFGMNQHLSNLAMSGLGPSSRMPMNPFMAQQQHQQQQQQRAANEMGFMLPKGEPNMDTNPERGSLNMQNGSSSMYQDIMNHMPLGPHM 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00069 686 FunFam WRKY transcription factor 266 335 - -
Vifa2g00069 686 FunFam WRKY transcription factor 33 462 528 - -
Vifa2g00069 686 MobiDBLite consensus disorder prediction 529 558 - -
Vifa2g00069 686 ProSiteProfiles WRKY domain profile. 470 535 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g00069 686 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 125 556 IPR044810 GO:0003700
Vifa2g00069 686 Gene3D WRKY domain 462 528 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa2g00069 686 MobiDBLite consensus disorder prediction 1 71 - -
Vifa2g00069 686 MobiDBLite consensus disorder prediction 39 66 - -
Vifa2g00069 686 SUPERFAMILY WRKY DNA-binding domain 273 334 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa2g00069 686 SUPERFAMILY WRKY DNA-binding domain 467 535 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa2g00069 686 MobiDBLite consensus disorder prediction 218 265 - -
Vifa2g00069 686 Gene3D WRKY domain 268 335 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa2g00069 686 ProSiteProfiles WRKY domain profile. 276 334 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g00069 686 MobiDBLite consensus disorder prediction 326 350 - -
Vifa2g00069 686 MobiDBLite consensus disorder prediction 393 448 - -
Vifa2g00069 686 MobiDBLite consensus disorder prediction 393 411 - -
Vifa2g00069 686 SMART WRKY_cls 475 534 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g00069 686 SMART WRKY_cls 275 333 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g00069 686 Pfam WRKY DNA -binding domain 476 532 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g00069 686 Pfam WRKY DNA -binding domain 276 332 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g00069 686 MobiDBLite consensus disorder prediction 537 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00069 Vifa-Chr2 5839101 5842030 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00069 1 681 WRKY Transcription Factor Family AT5G56270 48.431 1.88e-176 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa2g00069 WRKY 3.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00069 K18835 - gmx:100127395 977.622