Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00058 ATGACAAGTATTCAAAATCAGAATCAAAATCAAAATCAAAATCAAAATCAGTGTGAAACTGAACCCAAAACCCTAAACACAAACCCTTATCCTCCTCCAACTGCTCTCTACTCTGACCTTGTTCGTGACGCTAATCTCTTTAGGGAAAAGCTTCAATCTTTTCATGATTCTCTTGGTACCAGATTAAAAATTCCTACTATAGGAGGGAAGCCACTAGATCTTCATCACCTTTTTATTGAAGTAACATCTCGTGGTGGTGTGGAAAAGGTAATTGTAGATCGTAAATGGAAGGAAGTAATTATGACCTTCAACTTCCGGGATACCATAACAAGCGCATCATTCATGGTGCGCAGGTACTATCTATCATTGCTTTATCACTTTGAGCAAGCGTATTATTTGGGCAAGCAAGCCCCTCCCTCACCTCCTAGTGCTCTGAGTGGGAGCCTTGCCAATAATGTCTCAGCCAACAAGGAGGGTGCTGCTACCAATGATTCACCCGTTCAGGTTAGTCCAGCACAGTCAATTGGTTCTTCATTGCACGGAACAATTGACGAGAAATTTGACGGTGGATACATAGTTACAGTGAACCTAGGTTCTCAACAGCTGAAAGGTGTCCTGTACCATGTTTCAAGTAATGTATCTCAAAGTTCTTACACTAAAGGTTTATCAGGAGAAAGAGTTGAGAGATAA 690 0.4101 MTSIQNQNQNQNQNQNQCETEPKTLNTNPYPPPTALYSDLVRDANLFREKLQSFHDSLGTRLKIPTIGGKPLDLHHLFIEVTSRGGVEKVIVDRKWKEVIMTFNFRDTITSASFMVRRYYLSLLYHFEQAYYLGKQAPPSPPSALSGSLANNVSANKEGAATNDSPVQVSPAQSIGSSLHGTIDEKFDGGYIVTVNLGSQQLKGVLYHVSSNVSQSSYTKGLSGERVER 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00058 229 SMART ARID_2 38 128 - -
Vifa2g00058 229 Coils Coil 1 21 - -
Vifa2g00058 229 ProSiteProfiles ARID domain profile. 41 132 IPR001606 GO:0003677
Vifa2g00058 229 CDD ARID_HMGB9-like 43 128 IPR045303 GO:0003677
Vifa2g00058 229 SUPERFAMILY ARID-like 40 139 IPR036431 GO:0003677
Vifa2g00058 229 Gene3D - 36 144 IPR036431 GO:0003677
Vifa2g00058 229 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 9 216 - -
Vifa2g00058 229 SMART bright_3 42 133 IPR001606 GO:0003677
Vifa2g00058 229 MobiDBLite consensus disorder prediction 1 30 - -
Vifa2g00058 229 Pfam ARID/BRIGHT DNA binding domain 46 128 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00058 Vifa-Chr2 4865782 4869058 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00058 35 219 ARID Transcription Factor Family AT3G13350 51.309 2.36e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vifa2g00058 ARID 2.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00058 - - mtr:11414168 329.331
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g00058 2 4865782 4869058 Vifa2g00058 2 4865782 4869058 ECH