Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00054 ATGTCGATGTTACTAAGGAAATTGTTGGAAATTATGTTGAGACGAAATCCAACAAGTTCAGATGAAAATTCAAAACTAGTGTTAGAGCGTGGTGATTTCAATTTGGGTGAATTGGATCAACTACCTAGTGATATTTTGGTGCAAATTTTCAGAATTTTGGGTCCCAAAGAGACTCATCAATCTGATCCTTCTTGGGATTCTGTTTTCTTTGCTGAAACTAATTTGACTTCTGGTTACCCTATTCCATCCTTTGTTGGTCAGAGGCCTCAGTTGTCATTCAAACATATCTATGGCCAAAGAGCACAAGTTCCCGGTGCAATTATCATCGACGGCGGTTCTGGCTATTGCAAATTTGGTTGGAGCAAATATGCTTGTCCGTCAGGACAATCTGCGACATTTTTGGAATTCGGCAACATTGAGTCGCCAATGTATACTAGACTTCGACATTTTTTCGCAACTTTTTATAACAGGATGCAAGTGAAACCGAATAATCAACCGGTTATTGTTACTATACCGATATGCCATTATGAAGATTCTGAAGCAGCGAGAACATCGAGACGACAACTTAAAGAAGCGATTTATGCTTCTCTATTCGACTTGAATGTTCCTTCTGTTTGTGCTGTCAACCAGGCGACTCTAGCATTATATGCTGCGAAACGAACTTCTGGAATAGTGGTTAATATAGGTTTTCAAGTCACATCGATAGTTCCAATTTTTAACGGTAAAGTAATGCGCAAGATCGGCGTGAAAGTTTTGGGACTCGGAGCGTTGAAAGTTACAGGATTTCTTAAGGAAAAGATGCAACAAAATAACCTAAGTTTTCAATCATTGTACACCGTTCGCGCTTTGAAAGAGAATCTATGCTACGTTGCTCTTGATTACGAAGCCGAGCTATTGAAAAAAAACACACAAGCATCATTTCAAACTGCGGTAGATGGATTGTTTACACTTTCGAAAGAACGGTTTCAGGCAGCCGAGGTTTTATTCAAGCCGCATCTTGCTGGATCGGAATCGATGGGTTTGCACCAGGTCATAGCTCTTTGTATGTTGAACTGCCATTCTGCAGATTTACCGGGCGAAAGCGATTGGTACAAAACTGTCGTTTTATCGGGAGGAACTGCATGTTTGCCAGGTTTGGCAGAAAGATTAGAGAAGGAACTCCATAGCTTCCTTCCTCCACACGTGTCGAATGGAATTAGAGTCACACCTCCTCCATACGGCGTCGATACTCCATGGTTCGGAGCAAAGATGATTGGCAATTTGAGCACATTTCCCGGTCCTTGGTGTGTGGAAAAATCAAAGTTTCGGCAGAAGCCTAGGCTGAGTCTCATGTGGTGA 1338 0.417 MSMLLRKLLEIMLRRNPTSSDENSKLVLERGDFNLGELDQLPSDILVQIFRILGPKETHQSDPSWDSVFFAETNLTSGYPIPSFVGQRPQLSFKHIYGQRAQVPGAIIIDGGSGYCKFGWSKYACPSGQSATFLEFGNIESPMYTRLRHFFATFYNRMQVKPNNQPVIVTIPICHYEDSEAARTSRRQLKEAIYASLFDLNVPSVCAVNQATLALYAAKRTSGIVVNIGFQVTSIVPIFNGKVMRKIGVKVLGLGALKVTGFLKEKMQQNNLSFQSLYTVRALKENLCYVALDYEAELLKKNTQASFQTAVDGLFTLSKERFQAAEVLFKPHLAGSESMGLHQVIALCMLNCHSADLPGESDWYKTVVLSGGTACLPGLAERLEKELHSFLPPHVSNGIRVTPPPYGVDTPWFGAKMIGNLSTFPGPWCVEKSKFRQKPRLSLMW 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00054 445 Gene3D - 152 435 - -
Vifa2g00054 445 Gene3D Actin; Chain A, domain 4 254 338 - -
Vifa2g00054 445 CDD NBD_sugar-kinase_HSP70_actin 107 257 - -
Vifa2g00054 445 SMART actin_3 104 435 IPR004000 -
Vifa2g00054 445 Pfam Actin 153 429 IPR004000 -
Vifa2g00054 445 PANTHER ACTIN 152 433 IPR004000 -
Vifa2g00054 445 SUPERFAMILY Actin-like ATPase domain 220 429 IPR043129 -
Vifa2g00054 445 Gene3D - 211 410 - -
Vifa2g00054 445 SUPERFAMILY Actin-like ATPase domain 105 226 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00054 Vifa-Chr2 4493562 4497472 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00054 153 441 Cytoskeleton Gene Families AT3G12110 32.770 4.15e-45 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00054 K16616 - gmx:100791973 691.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g00054 2 4493562 4497472 Vifa2g00054 2 4493562 4497472 ECH