Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00047 ATGAATAAATCTACTTATACATGTGAGATAGTGGAATCAAGGGAAGAGATATTACCCGAGTTCGAAATCGATGAAAAACCCGAGAGTAGTTGTTCGTATAGATTAGGAAAACGGTACTCGATCAAGGATGATATCGATCGTCTTTTCCAGGCTATTGAGATTAATAAAAGTTCGTCTAGAAGTCATAGTATGTCTCAGTCGCGAAATAGTGCTCTTAAAAGACCGATTAAAGTTTGTTCGTCTCAGGCATCGGGAATTGGCATTGCCGAGCGAGTAAGTTTGAAGCAGGCGCTTAGAGGATTGTGTATCTCGCAAGCATCAGAAATGGCTGCTTTGAAGAGACTATCGAAGCAATGCGGATCTTCGAGAGTATCAGACGTTGGCACAGGTAAAAAGTTGGTTGAAATCTCCCTCGTGCCGGAGATATTAAGCTCGAAAGAAATGACAACTAGGTTTGTGTCCCGAGATCAGATTGTTCCCCTTCCGCCTGAAGTTGAAGTTGACAAGCCAGCGATACAAACCGAGGAAGTGCTAGAGGTCAGAACGAATCTTGCTACCGAGAGTAAATTTTGTCTCGGTTCTTCATTGTCAGATAAGGACAAGGATGGAAATTTACCATGTGCATCTTGTCCGCGTAGCTCGAGCAATGAAAGTTCTGTGGACAAACCCTCGAGTATTAGTACATGTTTGGCAAAGCCGATATTCAATAACATGAACTTCCTGAAGAAAAAGGTAAAGAAAGATCTATGTTCCGCATCGAGCTGCTCTACTAGTAGATTTGACAAGGAGAATGGAAATTCTGATCTTAAGCGTGAAGTGAAAGAAAACGATGAAAAACTGTCTCCCTGCAGTTCAAATCATAGCTTTGAAGTTAACTCGATTAATGTTAATAGAGATTTTTCAGATAGCAAACGCGGCTTCGGTTTGAATTGCAATAAGAAAACTAAGTTTCTTCTTACAAAAGTCGACGAGAAATCAAGATCGAAGGAAAAGGGCGAGTTCTCTCATAGCTCAAAAAGTAGCATTGGTGAGTATAGCACTAGTAGCACAAGCATCAGTGAGGAGAGTAATCTAAGCAGTTCGAGTCGCAGCGGCCAACGACCGCACATGTCAAAACACTCGAGATGGAAAGCTATTCGTGCGGTTCAACAGCAGCATGGTGGTAATTTAAATTTAAAGCATTTCAGGCTGATAAGGAAGCTTGGTAGTGGAGACATTGGAACCGTTTATCTTGCGGAACTAATTGGTACTAGTTGTCTTTTTGCACTGAAAGTTATGGACAATGAATTTTTGGCGAGCAGGAAGAAAACATTTAGGGTTCAAACTGAAAGAGAGATTCTTCAAATGTTGGATCATCCGTTTCTTCCGACACTTTATTCTCATATTAATACATATAAGCTTTCTTGCTTGGTCATGGAGTATTGTCCAGGCGGTGATCTACATGTGCTGCGACAGAGGCAAACATACAAGAGCTTTTCGGAGCTGGCAACAAGGTTTTATGTTGCTGAAGTTCTTCTTGCACTTGAGTATTTGCACATGATGGGAGTTGTATATCGAGATCTAAAGCCGGAAAACATCCTTGTACGCGAAGATGGACATATAATGCTGACAGATTTTGACTTGTCACTCAGATGTTCTGTCAATGCAATGATAGTCAAATCATCTTCACCCGACGCAGATGCAGCAAAGAAGTTCTCCGGTTCTTGTTCGGGAACTAGCTGCATACACCCTTTCTGTCTTCAACCGGATTGGCAAGTTTCCTGCTTTACTCCTACTCTACTGTCTCCGGGAGCAAAATCTCGAAAGATGAAGGCTGAGTTACATGCTCAAGTCGGTCCACTGCCGCAACTTGTAGTCGAGCCTACTAGTGCACGGTCCAACTCCTTCGTTGGAACATACGAATATCTTGCTCCGGAGATCATCAAAAGCGAGGGCCATGGAAATGCTGTAGATTGGTGGACTTTCGGTATACTTTTGTTCGAACTTTTATACGGAAAAACTCCCTTCAAAGGTTCATCAAATGACGATACATTATCCAATATCGTGTCGCAGAACCTTACGTTTCCAGGTAGTCCTATAGTCAGTTTTCATGCAAGAGATTTGATCAGAGGATTGTTGATGAAGGATCCTGAAAATCGATTAGGTTCTGTAAAAGGCGCTGCGGAAATAAAACAGCATCCTTTCTTTGACGGCCTTAACTGGGCTCTAATACGGTGCGCTGCGCCACCGGAGCTCCCCAACTTTCGCGATTTCGGAACTAGTGCTTCGCCTATGGATGCACATAAGGAAAATGCAAATGATTTAGAGGATATAGATGATTGTGAAGAGTTTGAGCTGTTTTAG 2343 0.4238 MNKSTYTCEIVESREEILPEFEIDEKPESSCSYRLGKRYSIKDDIDRLFQAIEINKSSSRSHSMSQSRNSALKRPIKVCSSQASGIGIAERVSLKQALRGLCISQASEMAALKRLSKQCGSSRVSDVGTGKKLVEISLVPEILSSKEMTTRFVSRDQIVPLPPEVEVDKPAIQTEEVLEVRTNLATESKFCLGSSLSDKDKDGNLPCASCPRSSSNESSVDKPSSISTCLAKPIFNNMNFLKKKVKKDLCSASSCSTSRFDKENGNSDLKREVKENDEKLSPCSSNHSFEVNSINVNRDFSDSKRGFGLNCNKKTKFLLTKVDEKSRSKEKGEFSHSSKSSIGEYSTSSTSISEESNLSSSSRSGQRPHMSKHSRWKAIRAVQQQHGGNLNLKHFRLIRKLGSGDIGTVYLAELIGTSCLFALKVMDNEFLASRKKTFRVQTEREILQMLDHPFLPTLYSHINTYKLSCLVMEYCPGGDLHVLRQRQTYKSFSELATRFYVAEVLLALEYLHMMGVVYRDLKPENILVREDGHIMLTDFDLSLRCSVNAMIVKSSSPDADAAKKFSGSCSGTSCIHPFCLQPDWQVSCFTPTLLSPGAKSRKMKAELHAQVGPLPQLVVEPTSARSNSFVGTYEYLAPEIIKSEGHGNAVDWWTFGILLFELLYGKTPFKGSSNDDTLSNIVSQNLTFPGSPIVSFHARDLIRGLLMKDPENRLGSVKGAAEIKQHPFFDGLNWALIRCAAPPELPNFRDFGTSASPMDAHKENANDLEDIDDCEEFELF 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00047 780 ProSitePatterns Serine/Threonine protein kinases active-site signature. 516 528 IPR008271 GO:0004672|GO:0006468
Vifa2g00047 780 MobiDBLite consensus disorder prediction 206 225 - -
Vifa2g00047 780 Pfam Protein kinase domain 396 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00047 780 Pfam Protein kinase domain 626 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00047 780 SUPERFAMILY Protein kinase-like (PK-like) 380 746 IPR011009 -
Vifa2g00047 780 Gene3D Transferase(Phosphotransferase) domain 1 623 747 - -
Vifa2g00047 780 SMART serkin_6 395 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00047 780 PANTHER FLIPPASE KINASE 1-RELATED 246 748 - -
Vifa2g00047 780 MobiDBLite consensus disorder prediction 263 281 - -
Vifa2g00047 780 MobiDBLite consensus disorder prediction 338 367 - -
Vifa2g00047 780 FunFam Serine/threonine-protein kinase D6PK-like 393 478 - -
Vifa2g00047 780 FunFam serine/threonine-protein kinase D6PK-like 624 747 - -
Vifa2g00047 780 ProSiteProfiles Protein kinase domain profile. 395 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00047 780 MobiDBLite consensus disorder prediction 328 376 - -
Vifa2g00047 780 Gene3D Transferase(Phosphotransferase) domain 1 475 544 - -
Vifa2g00047 780 FunFam serine/threonine-protein kinase D6PK-like 479 546 - -
Vifa2g00047 780 Gene3D Phosphorylase Kinase; domain 1 393 474 - -
Vifa2g00047 780 MobiDBLite consensus disorder prediction 255 285 - -
Vifa2g00047 780 CDD STKc_phototropin_like 393 752 - -
Vifa2g00047 780 MobiDBLite consensus disorder prediction 208 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00047 Vifa-Chr2 4364738 4367249 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00047 283 780 AGC Kinase Gene Family AT3G52890 61.373 0.0 619
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vifa2g00047 Pkinase 5.8e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00047 - - gmx:100784955 1124.38