Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00045 ATGGCAGAACAAGAACCACATCCACCACCAAACGATGTCTGCTCAATCTGCCACGGAACCTTCCAGATTCCCTGTCAAGCAAACTGCTCCCACTGGTTCTGCGCTAACTGTATACTCCTTCTCTGGCGCCACACTTCCGGCATTCAACCTTGCAAATGTCCGCTCTGTCGTCGACCGATCAACCTCTTGGTTCCGACTCATCCCACCGACCACATTAACAGCGATGATTCCAATCGGATTTTGTCCCAGATTCAGATTTATAACCGGACTTTTGGTCGCCAGGAGGATGCTCCCATTGCTCAGAGGATTCTTGATCTTCCGTTTTTGTTGAGGAGGCTGTTTAGGGATTTTGTTAACCCTAATAATTCGCTTCCGCTTGTTGTCAGAGCTCGGGTTTTCCTTTCGATGATTGTGAGTGTTATATACATCTTCAGCCCCATTGACATCATTCCAGAAGGAATATTGGGAGTGGTTGGTCTCTTGGATGATGTCCTAATTGCACTAATCTTCTTCCTATATGTTGCTACCCTCTATAGATCTGTTCTTTACCGCCGTCATGGGGGTGGGGGTGCATAA 576 0.474 MAEQEPHPPPNDVCSICHGTFQIPCQANCSHWFCANCILLLWRHTSGIQPCKCPLCRRPINLLVPTHPTDHINSDDSNRILSQIQIYNRTFGRQEDAPIAQRILDLPFLLRRLFRDFVNPNNSLPLVVRARVFLSMIVSVIYIFSPIDIIPEGILGVVGLLDDVLIALIFFLYVATLYRSVLYRRHGGGGA 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00045 191 Pfam Zinc finger, C3HC4 type (RING finger) 14 56 IPR018957 GO:0046872
Vifa2g00045 191 SMART ring_2 14 56 IPR001841 -
Vifa2g00045 191 CDD RING-HC_RNF113A_B 8 65 - -
Vifa2g00045 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 100 IPR013083 -
Vifa2g00045 191 SUPERFAMILY RING/U-box 9 71 - -
Vifa2g00045 191 ProSitePatterns Zinc finger RING-type signature. 29 38 IPR017907 -
Vifa2g00045 191 PANTHER UNCHARACTERIZED 4 186 IPR038896 GO:0061630
Vifa2g00045 191 ProSiteProfiles Zinc finger RING-type profile. 14 57 IPR001841 -
Vifa2g00045 191 Pfam Protein of unknown function (DUF1232) 135 168 IPR010652 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00045 39 189 C3H Transcription Factor Family AT1G72175 59.868 5.60e-48 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00045 K15707 - csin:114262088 242.276