Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00034 ATGTCCAAGGAGGAATCAATGCACCTGTTTTTGGTGGGTCTTGTTCGTCTTCAACTGGAAACTATTACCTACTTTGGTCAGATTACCGGGGCAAGTCCTGCAATTCCTGGAATGTTCCCAAATATGTTTCCCATGGCTACAAGTCAGCAATTTAATACACTCCCTGTCTTGCCTGTTCAGGCTATGACACAACAGGCAACACGGCATGCTAGGCGGGTGTATGTTGGGGGCCTCTCTCCTACAGCTAATGAGCAGTCAGTTGCAACTTTCTTCAGTCAGGTTATGGCTACAATCGGAGGAAACACTGCTGGTCCAGGTGATGCCGTTGTGAATGTTTACATTAACCATGATAAGAAGTTTGCCTTCGTGGAAATGAGGTCTGTCGAGGAAGCTAGCAATGCAATGGCTTTAGATGGAATTATTTTTGAGGGTGCACCAGTTAAGGTCAGGAGACCTACTGATTATAATCCTTCTCTAGCTGCTGCCCTAGGTCCAAGCCAACCTAACCCAAACCTTAATCTGGGTGCAGTCGGCCTATCACCTGGGTCTGCTGGGGGACTTGATGGTCCTGATCGGATTTTTGTTGGTGGAGTTCCTTATTACTTTACTGAAACACAGATCAGAGAGCTTTTAGAGACTTTTGGTCCTCTTCGGGGTTTTGATCTAGTGAAAGATAGAGAAACAGGGAATTCAAAGGGTTATGCGTTTTGTGTTTATCAAGATCTCGCCGTTACAGATATTGCTTGTGCAGCTCTCAATGGAATAAAAATGGGTGATAAGACCCTTACTGTTAGACGGGCTAATCAAAACACTAACCCAATGCAGCCTAAGCCTGAGCAAGAGAGTATTTTAATGCATGCACAGCAGCAGATTGCTCTCCAGAAACTAATGTTACAACCAGCATTAGTGGCAACAAAGGTGCTGTGTTTAACTCATGCAGTTTCTCCTGATGAGCTCAAAGATGACGAGGACTATGAAGAGATTCTTGATGATATGCGACAAGAGTGTTCCAAATTTGGTAATTTGGTGAATGTGGTGATTCCTCGCCCACGACCCGATGGTGAACTATGCCCTGGAGTTGGAAAGGTATTTTTGGAGTATGCTGATGTTGAAGGTTCTGCAAAAGCTCGTGCTGGGTTGAATGGAAGAAAATTTGGGGGAAATCAAGTAGTAGCTGTCTATTATGCCGAGAACAAATTTGCTGAGGGCGATTATGAAGGCTAA 1224 0.4461 MSKEESMHLFLVGLVRLQLETITYFGQITGASPAIPGMFPNMFPMATSQQFNTLPVLPVQAMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGAVGLSPGSAGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQNTNPMQPKPEQESILMHAQQQIALQKLMLQPALVATKVLCLTHAVSPDELKDDEDYEEILDDMRQECSKFGNLVNVVIPRPRPDGELCPGVGKVFLEYADVEGSAKARAGLNGRKFGGNQVVAVYYAENKFAEGDYEG 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00034 407 SUPERFAMILY RNA-binding domain, RBD 57 157 IPR035979 GO:0003676
Vifa2g00034 407 Gene3D - 301 406 IPR012677 -
Vifa2g00034 407 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 154 IPR000504 GO:0003723
Vifa2g00034 407 Gene3D - 66 167 IPR012677 -
Vifa2g00034 407 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 321 398 IPR000504 GO:0003723
Vifa2g00034 407 CDD RRM1_U2AF65 70 152 - -
Vifa2g00034 407 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 330 390 IPR000504 GO:0003723
Vifa2g00034 407 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 262 IPR000504 GO:0003723
Vifa2g00034 407 FunFam U2 snRNP auxiliary factor large subunit 168 283 - -
Vifa2g00034 407 FunFam U2 snRNP auxiliary factor large subunit 301 406 - -
Vifa2g00034 407 SMART rrm1_1 192 265 IPR000504 GO:0003723
Vifa2g00034 407 SMART rrm1_1 72 150 IPR000504 GO:0003723
Vifa2g00034 407 SMART rrm1_1 307 393 IPR000504 GO:0003723
Vifa2g00034 407 PANTHER RNA-BINDING PROTEIN 30 405 - -
Vifa2g00034 407 SUPERFAMILY RNA-binding domain, RBD 192 398 IPR035979 GO:0003676
Vifa2g00034 407 FunFam U2 snRNP auxiliary factor large subunit 66 167 - -
Vifa2g00034 407 Gene3D - 182 282 IPR012677 -
Vifa2g00034 407 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 22 405 IPR006529 GO:0003723|GO:0005634|GO:0006397
Vifa2g00034 407 CDD RRM2_U2AF65 191 267 - -
Vifa2g00034 407 CDD RRM3_U2AF65 305 393 - -
Vifa2g00034 407 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 269 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00034 Vifa-Chr2 2745773 2748622 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00034 193 386 Eukaryotic Initiation Factors Gene Family AT1G22760 25.641 1.97e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00034 K12837 - gmx:100793801 707.212